File |
Name |
Version |
Date |
Source |
Pubmed ID |
#Sequences |
#Bases |
|
Barley Agilent Array - Transcript data from HarvEST assembly 35 |
|
Jan 2012 |
|
25617470
21415278
22935196
|
46,848 |
40.06 Mbp |
Description: Transcript data from HarvEST assembly 35, two RNAseq experiments (Kohl et al., 2012; Thiel et al., 2012), and a full-length cDNA collection (Matsumoto et al., 2011) were assembled to 46,114 unique barley contigs. Unambiguous 60bp oligomer probes were derived using eArray (Agilent Technologies, Santa Clara, USA). For a detailed description see Kohl et al., 2015. Microarray design is available at EMBL-EBI ArrayExpress, accession A-MTAB-530. Best hits from BLASTx similarity searches against UniRef90, and high-confidence (HC) genes of the barley genome (2012) are included in the header.
|
|
Barley BAC Assemblies |
v1.0, IBSC_v2 |
Jun 2015 |
|
26801048
|
850,266 |
11.3 Gbp |
|
Barley Illumina BAC Contigs |
|
Jun 2015 |
|
26801048
|
2,183 |
277.16 Mbp |
|
Barley cv. 'Golden Promise' CDS |
v1 |
|
|
|
42,464 |
45.11 Mbp |
|
Barley cv. 'Golden Promise' pseudomolecules |
v1 |
|
|
|
8 |
4.13 Gbp |
|
454BacContigs Morex IBSC_v1 |
IBSC_v1 |
Jan 2012 |
|
23075845
|
86,251 |
512.64 Mbp |
Description: Mira assemblies for 4,095 barley BAC Clones. BACs were barcoded and sequenced in pools using either Roche 454 GS FLX or FLX Titanium Platform.
|
|
Barley full-length cDNAs derived from 12 clone libraries |
IBSC_v1 |
May 2011 |
|
21415278
|
28,622 |
47.57 Mbp |
|
Barley Morex HC cds IBSC_v1 |
IBSC_v1 |
Mar 2012 |
|
|
26,159 |
31.89 Mbp |
|
Barley Morex LC cds IBSC_v1 |
IBSC_v1 |
Mar 2012 |
|
|
53,220 |
17.0 Mbp |
|
Barley Morex Pseudomolecule Contigs |
v1.0, IBSC_v2 |
Aug 2015 |
|
|
464,895 |
4.79 Gbp |
|
Barley Morex Pseudomolecules |
|
Aug 2015 |
|
|
8 |
4.83 Gbp |
|
IPK barley ESTs |
|
|
|
|
206,633 |
106.72 Mbp |
Description: EST sequences of IPK barley cDNA clones (see https://apex.ipk-gatersleben.de/apex/f?p=CREST)
|
|
Barley Morex Exome Capture Regions 10x |
|
Apr 2018 |
|
23889683
|
168,097 |
48.36 Mbp |
Description: Sequence fragments at least 20bp in size from Morex WGS contigs that had at least 10x coverage in captured samples from 13 barley cultivars.
|
|
Barley Morex Exome Capture Regions 5x |
|
Apr 2018 |
|
23889683
|
207,448 |
67.7 Mbp |
Description: Sequence fragments at least 20bp in size from Morex WGS contigs that had at least 5x coverage in captured samples from 13 barley cultivars.
|
|
Barley Morex assembly_WGS IBSC_v1 |
IBSC_v1 |
Oct 2012 |
|
23075845
|
2,670,738 |
1.87 Gbp |
Description: Assembly from Whole Genome Shotgun sequencing of barley, cultivar Morex. Illumina Paired End 500 and Mate Pair 2500, total sequencing depth ~55x.
|
|
BacEndSequences IBSC_v1 |
IBSC_v1 |
May 2012 |
|
23075845
|
571,814 |
373.55 Mbp |
Description: Sanger sequenced ends of 304,523 barley BAC Clones.
|
|
Barley Genomic -start at 1st exon end of last exon- HC Genes Morex v1.0, IBSC_v2 |
v1.0, IBSC_v2 |
|
|
26801048
|
39,734 |
38.49 Mbp |
|
Barley Genomic -start at 1st exon end of last exon- LC Genes Morex v1.0, BSC_v2 |
v1.0, IBSC_v2 |
|
|
28447635
28448065
|
41,545 |
16.16 Mbp |
|
Barley Pseudomolecules Masked Morex v1.0, IBSC_v2 |
v1.0, IBSC_v2 |
Apr 2016 |
|
28447635
28448065
|
8 |
4.34 Gbp |
|
Barley CDS LC Morex v1.0, IBSC_v2 |
v1.0, IBSC_v2 |
|
|
28447635
28448065
|
40,819 |
92.98 Mbp |
|
Barley pseudomolecules Contigs Masked Morex v1.0, IBSC_v2 |
v1.0, IBSC_v2 |
|
|
28447635
28448065
|
464,895 |
4.79 Gbp |
|
Barley pseudomolecules Masked Morex v1.0, IBSC_v2 |
v1.0, IBSC_v2 |
|
|
28447635
28448065
|
8 |
4.83 Gbp |
|
Barley representative Transcripts HC |
v1.0, IBSC_v2 |
|
|
28447635
28448065
|
39,734 |
59.56 Mbp |
|
Barley representative Transcripts LC |
v1.0, IBSC_v2 |
|
|
28447635
28448065
|
41,949 |
39.77 Mbp |
|
Barley Pseudomolecules Morex v2.0 2019 |
v2.0 |
Jul 2019 |
e!DAL-PGP
|
31849336
|
8 |
4.34 Gbp |
|
Barley cv. Morex all CDS |
v2.0 |
Aug 2019 |
e!DAL-PGP
|
31849336
|
63,658 |
57.08 Mbp |
|
Barley Morex HC CDS |
v1.0, IBSC_v2 |
May 2016 |
|
|
39,734 |
38.49 Mbp |
Description: Genomic [start at 1st exon end of last exon] HC Genes (May 2016)
|
|
Barley Morex LC CDS |
v1.0, IBSC_v2 |
May 2016 |
|
|
41,545 |
16.16 Mbp |
Description: Genomic [start at 1st exon end of last exon] LC Genes (May 2016)
|
|
Barley CDS HC Morex v1.0, IBSC_v2 |
v1.0, IBSC_v2 |
May 2016 |
|
|
39,734 |
238.84 Mbp |
|
Barley CDS LC Morex v1.0, IBSC_v2 |
v1.0, IBSC_v2 |
May 2016 |
|
|
40,819 |
92.98 Mbp |
|
Barley Pseudomolecule Contigs masked Morex v1.0, IBSC_v2 |
v1.0, IBSC_v2 |
Apr 2016 |
|
|
464,895 |
4.79 Gbp |
|
Barley Pseudomolecules masked Morex v1.0, IBSC_v2 |
v1.0, IBSC_v2 |
Apr 2016 |
|
|
8 |
4.83 Gbp |
|
Barley representative Transcripts HC |
v1.0, IBSC_v2 |
May 2016 |
|
|
39,734 |
59.56 Mbp |
|
Barley representative Transcripts LC |
v1.0, IBSC_v2 |
May 2016 |
|
|
41,949 |
39.77 Mbp |
|
Barley pseudomolecules Morex v3.0 |
V3 |
Jul 2020 |
e!DAL-PGP
|
|
8 |
4.23 Gbp |
Description: Chromosomes 1H-7H. Unplaced scaffolds are merged into an additional artifical pseudomolecule 'chrUn'.
|
|
Barley all CDS Morex v3.0 |
V3 |
Jul 2020 |
e!DAL-PGP
|
|
83,990 |
71.84 Mbp |
|
Barley pseudomolecules 1-7H and unplaced scaffolds Morex v3.0 |
V3 |
Jul 2020 |
ENA
|
|
290 |
4.23 Gbp |
Description: In comparison to assembly 'morex_v3' this version of the Barley cv. Morex V3 consists of pseudomolecules 1H-7H. Artificial chromosomes 'chrUn' is represented by a set of unplaced scaffolds.
|
|
Barley Barke assembly_WGS |
|
Oct 2012 |
|
23075845
|
2,742,077 |
2.02 Gbp |
Description: Assembly from Whole Genome Shotgun sequencing of barley, cultivar Barke. Illumina Paired End 500, sequencing depth ~30x.
|
|
Barley Bowman assembly_WGS |
|
Oct 2012 |
ENA
|
23075845
|
2,077,901 |
1.78 Gbp |
Description: Assembly from Whole Genome Shotgun sequencing of barley, cultivar Bowman. Illumina Paired End 500, sequencing depth ~35x.
|
File |
Name |
Version |
Date |
Source |
Pubmed ID |
#Sequences |
#Bases |
|
Barley accession HOR 8148 pseudomolecules |
v1 |
May 2021 |
ENA
|
33239781
|
20,454 |
4.34 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 8148 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley accession HOR 8148 CDS from gene projection |
|
Mar 2020 |
|
33239781
|
45,026 |
47.58 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 8148 derived from gene projection.
|
|
Barley cultivar 'Akashinriki' pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
39,950 |
4.37 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Akashinriki' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley cultivar 'Akashinriki' CDS from gene projection |
|
Mar 2020 |
|
33239781
|
44,446 |
46.79 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Akashinriki derived from gene projection.
|
|
Barley genotype B1K_04_12_FT11 pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
22,357 |
4.27 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) genotype B1K_04_12_FT11 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley genotype B1K_04_12_FT11 CDS from gene projection |
|
Mar 2020 |
|
33239781
|
44,566 |
47.32 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) genotype B1K_04_12_FT11 derived from gene projection.
|
|
Barley cultivar 'Barke' pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
22,261 |
4.2 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Barke' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley cultivar 'Barke' CDS from denovo gene prediction |
|
Mar 2020 |
|
33239781
|
51,037 |
48.98 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Barke derived from denovo gene prediction.
|
|
Barley cultivar 'Chiba' pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
50,067 |
4.28 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Chiba' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley cultivar 'Du Li Huang' pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
47,929 |
4.68 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Du Li Huang' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley cultivar 'Golden Promise' pseudomolecules |
v1 |
Apr 2020 |
ENA
|
|
52,651 |
4.06 Gbp |
Description: Assembly version v1.0 (originally published by the James Hutton Institute) comprising chromosomes 1H to 7H and yet unplaced scaffolds.
|
|
Barley accession HOR 10350 pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
22,115 |
4.21 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 10350 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley accession HOR 10350 CDS from denovo gene prediction |
|
Mar 2020 |
|
33239781
|
31,454 |
38.48 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 10350 derived from denovo gene prediction.
|
|
Barley accession HOR 13821 pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
37,025 |
4.36 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 10350 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley accession HOR 13821 CDS from gene projection |
|
Mar 2020 |
|
33239781
|
44,714 |
47.36 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 13821 derived from gene projection.
|
|
Barley accession HOR 13942 pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
42,596 |
4.47 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 13821 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley accession HOR 13942 CDS from gene projection |
|
Mar 2020 |
|
33239781
|
44,718 |
47.14 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 13942 derived from gene projection.
|
|
Barley accession HOR 21599 pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
35,732 |
4.48 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 13942 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley accession HOR 21599 CDS from gene projection |
|
Mar 2020 |
|
33239781
|
44,456 |
47.13 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 21599 derived from gene projection.
|
|
Barley accession HOR 3081 pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
20,204 |
4.33 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 21599 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley accession HOR 3081 CDS from gene projection |
|
Mar 2020 |
|
33239781
|
45,146 |
47.85 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 3081 derived from gene projection.
|
|
Barley accession HOR 3365 pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
322,406 |
4.84 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 3081 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley accession HOR 3365 CDS from gene projection |
|
Mar 2020 |
|
33239781
|
47,588 |
48.26 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 3365 derived from gene projection.
|
|
Barley accession HOR 7552 pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
24,111 |
4.36 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 7552 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley accession HOR 7552 CDS from gene projection |
|
Mar 2020 |
|
33239781
|
44,641 |
47.25 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 7552 derived from gene projection.
|
|
Barley accession HOR 9043 pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
36,153 |
4.4 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 9043 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley accession HOR 9043 CDS from gene projection |
|
Mar 2020 |
|
33239781
|
45,028 |
47.61 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 9043 derived from gene projection.
|
|
Barley cultivar 'Hockett' pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
28,709 |
4.33 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 3365 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley cultivar 'Hockett' CDS from gene projection |
|
Mar 2020 |
|
33239781
|
46,450 |
49.49 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Hockett derived from gene projection.
|
|
Barley cultivar 'Igri' pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
21,911 |
4.33 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Igri' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley cultivar 'Igri' CDS from gene projection |
|
Mar 2020 |
|
33239781
|
45,213 |
47.89 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Igri derived from gene projection.
|
|
Barley cultivar 'Morex' CDS from denovo gene prediction |
|
Mar 2020 |
|
33239781
|
63,658 |
57.08 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Morex derived from denovo gene prediction.
|
|
Barley genotype OUN_333_BCC_747 pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
39,314 |
4.53 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) genotype OUN_333_BCC_747 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley genotype OUN_333_BCC_747 CDS from gene projection |
|
Mar 2020 |
|
33239781
|
44,699 |
47.27 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) genotype OUN_333_BCC_747 derived from gene projection.
|
|
Barley cultivar 'RGT Planet' pseudomolecules |
v1 |
Dec 2019 |
ENA
|
33239781
|
20,793 |
4.34 Gbp |
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'RGT Planet' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
|
|
Barley cultivar 'RGT Planet' CDS from gene projection |
|
Mar 2020 |
|
33239781
|
45,413 |
48.05 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar RGT_Planet derived from gene projection.
|
|
Barley genotype ZDM01467 CDS from gene projection |
|
Mar 2020 |
|
33239781
|
44,746 |
47.1 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) genotype ZDM01467 derived from gene projection.
|
|
Barley genotype ZDM02064 CDS from gene projection |
|
Mar 2020 |
|
33239781
|
45,050 |
47.77 Mbp |
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) genotype ZDM02064 derived from gene projection.
|
File |
Name |
Version |
Date |
Source |
Pubmed ID |
#Sequences |
#Bases |
|
Barley accession HOR 8148 proteins |
v1 |
Mar 2020 |
e!DAL-PGP
|
33239781
|
45,026 |
15.86 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
|
|
Barley cultivar 'Akashinriki' proteins |
v1 |
Mar 2020 |
e!DAL-PGP
|
33239781
|
44,446 |
15.6 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
|
|
Barley genotype B1K_04_12_FT11 proteins |
v1 |
Mar 2020 |
e!DAL-PGP
|
33239781
|
44,566 |
15.77 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
|
|
Barley cultivar 'Barke' protein sequences from denovo gene prediction |
v1 |
|
e!DAL-PGP
|
33239781
|
51,037 |
16.32 Mbp |
|
Barley cultivar 'Golden Promise' proteins |
|
Apr 2021 |
|
|
42,464 |
15.04 Mbp |
|
Barley accession HOR 10350 protein sequences from denovo gene prediction |
v1 |
Mar 2019 |
|
33239781
|
50,312 |
16.38 Mbp |
|
Barley accession HOR 13821 proteins, internal IDs version! |
|
Mar 2020 |
e!DAL-PGP
|
33239781
|
44,714 |
15.79 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
|
|
Barley accession HOR 13942 proteins, internal IDs version! |
v1 |
Mar 2020 |
e!DAL-PGP
|
33239781
|
44,718 |
15.71 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
|
|
Barley accession HOR 21599 proteins |
v1 |
Mar 2020 |
e!DAL-PGP
|
33239781
|
44,456 |
15.71 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
|
|
Barley accession HOR 3081 proteins |
v1 |
Mar 2020 |
e!DAL-PGP
|
33239781
|
45,146 |
15.95 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
|
|
Barley accession HOR 3365 proteins |
|
Mar 2020 |
e!DAL-PGP
|
33239781
|
47,588 |
16.09 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
|
|
Barley accession HOR 7552 proteins |
v1 |
Mar 2020 |
e!DAL-PGP
|
33239781
|
44,641 |
15.75 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
|
|
Barley accession HOR 9043 proteins |
v1 |
Mar 2020 |
e!DAL-PGP
|
33239781
|
45,028 |
15.87 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
|
|
Barley cultivar 'Hockett' proteins |
v1 |
Mar 2020 |
e!DAL-PGP
|
33239781
|
46,450 |
16.5 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
|
|
Barley cultivar 'Igri' proteins |
v1 |
Mar 2020 |
e!DAL-PGP
|
33239781
|
45,213 |
15.96 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including self-projections).
|
|
Barley cultivar 'Morex' protein sequences from denovo gene prediction |
v1 |
Feb 2019 |
e!DAL-PGP
|
33239781
|
63,658 |
19.03 Mbp |
|
Barley genotype OUN_333_BCC_747 proteins |
v1 |
Mar 2020 |
e!DAL-PGP
|
33239781
|
44,699 |
15.76 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
|
|
Barley cultivar 'RGT Planet' proteins |
v1 |
Mar 2020 |
e!DAL-PGP
|
33239781
|
45,413 |
16.02 Mbp |
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
|
File |
Name |
Version |
Date |
Source |
Pubmed ID |
#Sequences |
#Bases |
|
Avena atlantica CC7277 v1 pseudomolecules |
v1 |
|
ENA
|
|
2,195 |
3.69 Gbp |
|
Avena eriantha BYU132 v1 pseudomolecules |
v1 |
|
ENA
|
|
2,652 |
3.78 Gbp |
|
Avena insularis BYU209 v1 pseudomolecules |
v1 |
|
ENA
|
|
6,537 |
14.18 Gbp |
Description: Genome sequence assembly (pseudomolecules) and structural annotation (both protein coding genes and TEs/repeats) of tetraploid (4x) Avena insularis (BYU209).
|
|
Avena insularis BYU209 v1 all CDS |
v1 |
|
e!DAL-PGP
|
|
136,548 |
132.54 Mbp |
|
Avena insularis BYU209 v1 CDS HC |
v1 |
|
e!DAL-PGP
|
|
64,550 |
83.71 Mbp |
|
Avena insularis BYU209 v1 CDS LC |
v1 |
|
e!DAL-PGP
|
|
71,998 |
48.83 Mbp |
|
Avena longiglumis CN58138 v1 pseudomolecules |
v1 |
|
ENA
|
|
890 |
7.4 Gbp |
Description: Genome sequence assembly (pseudomolecules) and structural annotation (both protein coding genes and TEs/repeats) of diploid (2x) Avena longiglumis (CN58138).
|
|
Avena longiglumis CN58138 v1.cds |
v1 |
|
e!DAL-PGP
|
|
85,326 |
84.84 Mbp |
|
Avena longiglumis CN58138 v1 CDS HC |
v1 |
|
e!DAL-PGP
|
|
42,564 |
54.92 Mbp |
|
Avena longiglumis CN58138 v1 CDS LC |
v1 |
|
e!DAL-PGP
|
|
42,762 |
29.92 Mbp |
|
Avena sativa cv. Sang v1.1 all CDS |
v1,1 |
|
e!DAL-PGP
|
|
174,318 |
170.83 Mbp |
|
Avena sativa cv. Sang v1 pseudomolecules |
v1 |
|
ENA
|
|
22 |
11.01 Gbp |
Description: This data release contains the genome sequence assembly (pseudomolecules) and structural annotation (both protein coding genes and TEs/repeats) of hexaploid (6x) Avena sativa (cv. Sang) from the PanOat project.
|
|
Avena sativa cv. Sang v1.1 CDS HC |
v1,1 |
|
e!DAL-PGP
|
|
94,976 |
123.17 Mbp |
Description: Structural annotation (both protein coding genes and TEs/repeats) of hexaploid (6x) Avena sativa (cv. Sang). Sang version 1.0 and 1.1 gene annotation differences - both annotation versions refer to the same genome assembly sequence (included with this release) and only differ in the addition of manually curated gene models (e.g. for the prolamin gene family) in release version 1.1. Gene identifiers have been kept stable between the two annotation versions wherever possible (that means, some genes may have been removed, merged or added in v1.1).
|
|
Avena sativa cv. Sang v1.1 CDS LC |
v1,1 |
|
e!DAL-PGP
|
|
79,342 |
47.66 Mbp |
Description: Structural annotation (both protein coding genes and TEs/repeats) of hexaploid (6x) Avena sativa (cv. Sang). Sang version 1.0 and 1.1 gene annotation differences - both annotation versions refer to the same genome assembly sequence (included with this release) and only differ in the addition of manually curated gene models (e.g. for the prolamin gene family) in release version 1.1. Gene identifiers have been kept stable between the two annotation versions wherever possible (that means, some genes may have been removed, merged or added in v1.1).
|
File |
Name |
Version |
Date |
Source |
Pubmed ID |
#Sequences |
#Bases |
|
Arina Lrfor Pseudomolecules |
v3.0 |
Aug 2018 |
ENA
|
33239791
|
135,719 |
14.65 Gbp |
Description: Triticum aestivum cv. 'Arina Lrfor' pseudomolecules and unlocalised scaffolds
|
|
Wheat cv. 'Arina Lrfor' gene projection CDS |
v3.0 |
|
|
33239791
|
120,967 |
139.5 Mbp |
|
Wheat cv. 'Cadenza' scaffolds |
v1.1 |
|
|
|
1,065,576 |
14.08 Gbp |
|
Wheat cv. 'Clair' scaffolds |
v1.1 |
|
|
|
1,216,421 |
14.3 Gbp |
|
Wheat cv. 'Jagger' Pseudomolecules |
v1.1 |
May 2018 |
ENA
|
33239791
|
138,393 |
14.54 Gbp |
|
Wheat cv. 'Jagger' gene projection CDS |
v1.1 |
|
|
33239791
|
119,461 |
138.31 Mbp |
|
Wheat cv. 'Julius' Pseudomolecules |
v1.0, MAGIC3 |
Aug 2017 |
ENA
|
33239791
|
98,541 |
14.39 Gbp |
|
Wheat cv. 'Julius' gene projection CDS |
v1.0, MAGIC3 |
|
|
33239791
|
119,135 |
138.05 Mbp |
|
Wheat cv. 'Lancer' Pseudomolecules |
v1.0 |
Nov 2018 |
ENA
|
33239791
|
119,569 |
14.28 Gbp |
|
Wheat cv. 'Longreach Lancer' gene projection CDS |
v1.0 |
|
|
33239791
|
120,045 |
138.8 Mbp |
|
Wheat cv. 'CDC Landmark' Pseudomolecules |
v1.0 |
Aug 2017 |
ENA
|
33239791
|
106,140 |
14.43 Gbp |
|
Wheat cv. 'CDC Landmark' gene projection CDS |
v1.0 |
|
|
33239791
|
119,027 |
138.24 Mbp |
|
Wheat cv. 'Mace' Pseudomolecules |
v1.0 |
Nov 2018 |
ENA
|
33239791
|
119,606 |
14.35 Gbp |
|
Wheat cv. 'Mace' gene projection CDS |
v1.0 |
Jul 2019 |
|
33239791
|
119,772 |
138.75 Mbp |
|
Wheat cv. 'Norin61' Pseudomolecules |
v1.1 |
Mar 2019 |
ENA
|
33239791
|
21,465 |
14.91 Gbp |
|
Wheat cv. 'Norin61' gene projection CDS |
v1.1 |
|
|
33239791
|
118,734 |
138.08 Mbp |
|
Wheat cv. 'Paragon' scaffolds |
v1.1 |
|
|
|
1,254,002 |
14.44 Gbp |
|
Wheat cv. 'Robigus' scaffolds |
v1.1 |
|
|
|
1,079 |
455.67 Mbp |
|
Wheat cv. 'SY Mattis' Pseudomolecules |
v1 |
Oct 2018 |
ENA
|
33239791
|
705,997 |
14.88 Gbp |
|
Wheat cv. 'Chinese spring' gene projection CDS |
v1 |
|
|
33239791
|
123,075 |
142.1 Mbp |
|
Triticum spelta accession PI:190962 Pseudomolecules |
v1.0 |
May 2019 |
ENA
|
33239791
|
145,069 |
14.44 Gbp |
|
Triticum spelta accession PI:190962 gene projection CDS |
v1.0 |
|
|
33239791
|
120,104 |
138.71 Mbp |
|
Wheat cv. 'CDC Stanley' Pseudomolecules |
v1.2 |
Sep 2018 |
ENA
|
33239791
|
104,381 |
14.46 Gbp |
|
Wheat cv. 'CDC Stanley' gene projection CDS |
v1.2 |
|
|
33239791
|
119,377 |
138.5 Mbp |
|
Wheat cv. 'Weebill 1' Scaffolds |
v1 |
|
|
|
1,411,939 |
14.2 Gbp |