All data tables

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Barley

Internal BLAST ID Name Version Date Source Pubmed ID #Sequences #Bases
barley_agilent Barley Agilent Array - Transcript data from HarvEST assembly 35 na 46,848 40.06 Mbp
barley_agilent Barley Agilent Array - Transcript data from HarvEST assembly 35 Jan 2012 na 25617470 21415278 22935196 46,848 40.06 Mbp
Description: Transcript data from HarvEST assembly 35, two RNAseq experiments (Kohl et al., 2012; Thiel et al., 2012), and a full-length cDNA collection (Matsumoto et al., 2011) were assembled to 46,114 unique barley contigs. Unambiguous 60bp oligomer probes were derived using eArray (Agilent Technologies, Santa Clara, USA). For a detailed description see Kohl et al., 2015. Microarray design is available at EMBL-EBI ArrayExpress, accession A-MTAB-530. Best hits from BLASTx similarity searches against UniRef90, and high-confidence (HC) genes of the barley genome (2012) are included in the header.
barley_bac_15 Barley BAC Assemblies v1.0, IBSC_v2 Jun 2015 na 850,266 11.3 Gbp
barley_bac_ill Barley Illumina BAC Contigs Jun 2015 na 2,183 277.16 Mbp
gp_cds.v1 Barley cv. 'Golden Promise' CDS v1 na 42,464 45.11 Mbp
gp_chr.v1 Barley cv. 'Golden Promise' pseudomolecules v1 na 8 4.13 Gbp
morex_12.bac 454BacContigs Morex IBSC_v1 IBSC_v1 Jan 1970 na 23075845 86,251 512.64 Mbp
Description: Mira assemblies for 4,095 barley BAC Clones. BACs were barcoded and sequenced in pools using either Roche 454 GS FLX or FLX Titanium Platform.
morex_12.flcdna Barley full-length cDNAs derived from 12 clone libraries IBSC_v1 May 2011 na 21415278 28,622 47.57 Mbp
morex_12.hc Barley Morex HC cds IBSC_v1 Mar 2012 na 26,159 31.89 Mbp
morex_12.lc Barley Morex LC cds IBSC_v1 Mar 2012 na 53,220 17.0 Mbp
morex_15.con Barley Morex Pseudomolecule Contigs v1.0, IBSC_v2 Aug 2015 na 464,895 4.79 Gbp
morex_15.pseu Barley Morex Pseudomolecules Aug 2015 na 8 4.83 Gbp
morex_ests IPK barley ESTs na 206,633 106.72 Mbp
Description: EST sequences of IPK barley cDNA clones (see http://pgrc.ipk-gatersleben.de/cr-est)
morex_exon10 Barley Morex Exome Capture Regions 10x Apr 2018 na 23889683 168,097 48.36 Mbp
Description: Sequence fragments at least 20bp in size from Morex WGS contigs that had at least 10x coverage in captured samples from 13 barley cultivars.
morex_exon5 Barley Morex Exome Capture Regions 5x Apr 2018 na 23889683 207,448 67.7 Mbp
Description: Sequence fragments at least 20bp in size from Morex WGS contigs that had at least 5x coverage in captured samples from 13 barley cultivars.
morex_v1 Barley Morex assembly_WGS IBSC_v1 IBSC_v1 ?????? Oct 2012 na 23075845 2,670,738 1.87 Gbp
Description: Assembly from Whole Genome Shotgun sequencing of barley, cultivar Morex. Illumina Paired End 500 and Mate Pair 2500, total sequencing depth ~55x.
morex_v1.bac BacEndSequences IBSC_v1 IBSC_v1 May 2012 na 23075845 571,814 373.55 Mbp
Description: Sanger sequenced ends of 304,523 barley BAC Clones.
morex_v1.cds.hc Barley Genomic cds na 39,734 38.49 Mbp
morex_v1.cds.lc Barley Genomic cds na 41,545 16.16 Mbp
morex_v1.hc Barley Pseudomolecules Masked Morex v1.0, IBSC_v2 v1.0, IBSC_v2 Apr 2016 na 8 4.34 Gbp
morex_v1.lc Barley CDS LC Morex v1.0, IBSC_v2 lc na 40,819 92.98 Mbp
morex_v1.mask.pseu Barley pseudomolecules Contigs Masked Morex v1.0, IBSC_v2 mask na 464,895 4.79 Gbp
morex_v1.pseu Barley pseudomolecules Masked Morex v1.0, IBSC_v2 pseu na 8 4.83 Gbp
morex_v1.trans.hc Barley representative Transcripts HC trans na 39,734 59.56 Mbp
morex_v1.trans.lc Barley representative Transcripts LC trans na 41,949 39.77 Mbp
morex_v2 Barley Pseudomolecules Morex v2.0 2019 v2.0 Jul 2019 e!DAL-PGP 31849336 8 4.34 Gbp
morex_v2.all.cds Barley cv. Morex all CDS v2.0 Aug 2019 e!DAL-PGP 31849336 63,658 57.08 Mbp
morex_v2.cds.hc Barley Morex HC CDS v1.0, IBSC_v2 May 2016 na 39,734 38.49 Mbp
Description: Genomic [start at 1st exon end of last exon] HC Genes (May 2016)
morex_v2.cds.lc Barley Morex LC CDS v1.0, IBSC_v2 May 2016 na 41,545 16.16 Mbp
Description: Genomic [start at 1st exon end of last exon] LC Genes (May 2016)
morex_v2.hc Barley CDS HC Morex v1.0, IBSC_v2 v1.0, IBSC_v2 May 2016 na 39,734 238.84 Mbp
morex_v2.lc Barley CDS LC Morex v1.0, IBSC_v2 v1.0, IBSC_v2 May 2016 na 40,819 92.98 Mbp
morex_v2.mask.pseu Barley Pseudomolecule Contigs masked Morex v1.0, IBSC_v2 v1.0, IBSC_v2 Apr 2016 na 464,895 4.79 Gbp
morex_v2.pseu Barley Pseudomolecules masked Morex v1.0, IBSC_v2 v1.0, IBSC_v2 Apr 2016 na 8 4.83 Gbp
morex_v2.trans.hc Barley representative Transcripts HC v1.0, IBSC_v2 May 2016 na 39,734 59.56 Mbp
morex_v2.trans.lc Barley representative Transcripts LC v1.0, IBSC_v2 May 2016 na 41,949 39.77 Mbp
morex_v3 Barley pseudomolecules Morex v3.0 V3 Jul 2020 e!DAL-PGP 8 4.23 Gbp
Description: Chromosomes 1H-7H. Unplaced scaffolds are merged into an additional artifical pseudomolecule 'chrUn'.
morex_v3.all.cds Barley all CDS Morex v3.0 V3 Jul 2020 e!DAL-PGP 83,990 71.84 Mbp
morex_v3.scaf Barley pseudomolecules 1-7H and unplaced scaffolds Morex v3.0 V3 Jul 2020 ENA 290 4.23 Gbp
Description: In comparison to assembly 'morex_v3' this version of the Barley cv. Morex V3 consists of pseudomolecules 1H-7H. Artificial chromosomes 'chrUn' is represented by a set of unplaced scaffolds.
wgs_barke Barley Barke assembly_WGS Oct 2012 na 23075845 2,742,077 2.02 Gbp
Description: Assembly from Whole Genome Shotgun sequencing of barley, cultivar Barke. Illumina Paired End 500, sequencing depth ~30x.
wgs_bowman Barley Bowman assembly_WGS Oct 2012 ENA 23075845 2,077,901 1.78 Gbp
Description: Assembly from Whole Genome Shotgun sequencing of barley, cultivar Bowman. Illumina Paired End 500, sequencing depth ~35x.

Barley proteins

Internal BLAST ID Name Version Date Source Pubmed ID #Sequences #Bases
barley_ibcs_1.hc Barley HC Proteins IBSC_v1 IBSC_1 Mar 2012 na 23075845 23998490 26,159 10.63 Mbp
Description: Barley gene annotations derived from the Morex 55x WGS sequence.In general, this gene set is a combination of RNA-seq-derived and barley flCDNAs-derived predictions. Per gene locus, only one representative gene model was selected (in case of alternative transcripts structures).Gene models were filtered for high-confidence (HC) and low-confidence (LC) predictions based on sequence homology to other angiosperm proteins (OrthoMCL and BLAST used). Both sets contain POPSEQ anchoring information and Blast2GO annotations. WARNING - This gene set is likely to be incomplete with respect to the barley full gene complement and many genes may be truncated (not full length) due to the WGS assembly sequence structure!
barley_ibcs_1.lc Barley LC Proteins IBSC_v1 IBSC_v1 Mar 2012 na 23075845 23998490 53,220 5.67 Mbp
Description: Barley gene annotations derived from the Morex 55x WGS sequence.In general, this gene set is a combination of RNA-seq-derived and barley flCDNAs-derived predictions. Per gene locus, only one representative gene model was selected (in case of alternative transcripts structures).Gene models were filtered for high-confidence (HC) and low-confidence (LC) predictions based on sequence homology to other angiosperm proteins (OrthoMCL and BLAST used). Both sets contain POPSEQ anchoring information and Blast2GO annotations. WARNING - This gene set is likely to be incomplete with respect to the barley full gene complement and many genes may be truncated (not full length) due to the WGS assembly sequence structure!
morex_v1.hc Barley HC Proteins Morex v1.0, IBSC_v2 v1.0, IBSC_v2 May 2016 na 39,734 12.83 Mbp
morex_v1.lc Barley LC Proteins Morex v1.0, IBSC_v2 v1.0, IBSC_v2 May 2016 na 41,545 5.39 Mbp
morex_v2.lc.hc Morex v2.0 proteins v2.0 Aug 2019 e!DAL-PGP 31849336 63,658 19.03 Mbp
Description: Morex proteins, both HC and LC
morex_v3.HC Barley HC Proteins Morex V3 V3 Jul 2020 e!DAL-PGP 37,963 15.03 Mbp
morex_v3.LC Barley LC Proteins Morex V3 V3 Jul 2020 e!DAL-PGP 45,698 8.87 Mbp
morex_v3.all Barley all Proteins Morex V3 V3 Jul 2020 e!DAL-PGP 83,661 23.9 Mbp

Barley pan-genome

Internal BLAST ID Name Version Date Source Pubmed ID #Sequences #Bases
shape_8184 Barley accession HOR 8148 pseudomolecules v1 May 0201 ENA 20,454 4.34 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 8148 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_8184.cds Barley accession HOR 8148 CDS from gene projection Mar 2020 na 45,026 47.58 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 8148 derived from gene projection.
shape_aka Barley cultivar 'Akashinriki' pseudomolecules v1 Dec 2019 ENA 39,950 4.37 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Akashinriki' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_aka.cds Barley cultivar 'Akashinriki' CDS from gene projection Mar 2020 na 44,446 46.79 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Akashinriki derived from gene projection.
shape_b1k Barley genotype B1K_04_12_FT11 pseudomolecules v1 Dec 2019 ENA 22,357 4.27 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) genotype B1K_04_12_FT11 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_b1k.cds Barley genotype B1K_04_12_FT11 CDS from gene projection Mar 2020 na 44,566 47.32 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) genotype B1K_04_12_FT11 derived from gene projection.
shape_barke Barley cultivar 'Barke' pseudomolecules v1 Dec 2019 ENA 22,261 4.2 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Barke' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_barke_cds Barley cultivar 'Barke' CDS from denovo gene prediction Mar 2020 na 51,037 48.98 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Barke derived from denovo gene prediction.
shape_chiba Barley cultivar 'Chiba' pseudomolecules v1 Dec 2019 ENA 50,067 4.28 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Chiba' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_dulihang Barley cultivar 'Du Li Huang' pseudomolecules v1 Dec 2019 ENA 47,929 4.68 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Du Li Huang' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_golden_promise Barley cultivar 'Golden Promise' pseudomolecules na 52,651 4.06 Gbp
shape_h10350 Barley accession HOR 10350 pseudomolecules v1 Dec 2019 ENA 22,115 4.21 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Hockett' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_h10350_cds Barley accession HOR 10350 CDS from denovo gene prediction Mar 2020 na 31,454 38.48 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 10350 derived from denovo gene prediction.
shape_h13821 Barley accession HOR 13821 pseudomolecules v1 Dec 2019 ENA 37,025 4.36 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 10350 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_h13821.cds Barley accession HOR 13821 CDS from gene projection Mar 2020 na 44,714 47.36 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 13821 derived from gene projection.
shape_h13942 Barley accession HOR 13942 pseudomolecules v1 Dec 2019 ENA 42,596 4.47 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 13821 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_h13942.cds Barley accession HOR 13942 CDS from gene projection Mar 2020 na 44,718 47.14 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 13942 derived from gene projection.
shape_h21599 Barley accession HOR 21599 pseudomolecules v1 Dec 2019 ENA 35,732 4.48 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 13942 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_h21599.cds Barley accession HOR 21599 CDS from gene projection Mar 2020 na 44,456 47.13 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 21599 derived from gene projection.
shape_h3081 Barley accession HOR 3081 pseudomolecules v1 Dec 2019 ENA 20,204 4.33 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 21599 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_h3081.cds Barley accession HOR 3081 CDS from gene projection Mar 2020 na 45,146 47.85 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 3081 derived from gene projection.
shape_h3365 Barley accession HOR 3365 pseudomolecules v1 Dec 2019 ENA 322,406 4.84 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 3081 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_h3365.cds Barley accession HOR 3365 CDS from gene projection Mar 2020 na 47,588 48.26 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 3365 derived from gene projection.
shape_h7552 Barley accession HOR 7552 pseudomolecules v1 Dec 2019 ENA 24,111 4.36 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 7552 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_h7552.cds Barley accession HOR 7552 CDS from gene projection Mar 2020 na 44,641 47.25 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 7552 derived from gene projection.
shape_h9043 Barley accession HOR 9043 pseudomolecules v1 Dec 2019 ENA 36,153 4.4 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 9043 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_h9043.cds Barley accession HOR 9043 CDS from gene projection Mar 2020 na 45,028 47.61 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 9043 derived from gene projection.
shape_hockett Barley cultivar 'Hockett' pseudomolecules v1 Dec 2019 ENA 28,709 4.33 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 3365 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_hockett.cds Barley cultivar 'Hockett' CDS from gene projection Mar 2020 na 46,450 49.49 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Hockett derived from gene projection.
shape_igri Barley cultivar 'Igri' pseudomolecules v1 Dec 2019 ENA 21,911 4.33 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Igri' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_igri.cds Barley cultivar 'Igri' CDS from gene projection Mar 2020 na 45,213 47.89 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Igri derived from gene projection.
shape_mores_cds Barley cultivar 'Morex' CDS from denovo gene prediction Mar 2020 na 63,658 57.08 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Morex derived from denovo gene prediction.
shape_oun333 Barley genotype OUN_333_BCC_747 pseudomolecules v1 Dec 2019 ENA 39,314 4.53 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) genotype OUN_333_BCC_747 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_oun333.cds Barley genotype OUN_333_BCC_747 CDS from gene projection Mar 2020 na 44,699 47.27 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) genotype OUN_333_BCC_747 derived from gene projection.
shape_rgt Barley cultivar 'RGT Planet' pseudomolecules v1 Dec 2019 ENA 20,793 4.34 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'RGT Planet' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
shape_rgt.cds Barley cultivar 'RGT Planet' CDS from gene projection Mar 2020 na 45,413 48.05 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar RGT_Planet derived from gene projection.
shape_zdm01467.cds Barley genotype ZDM01467 CDS from gene projection Mar 2020 na 44,746 47.1 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) genotype ZDM01467 derived from gene projection.
shape_zdm02064.cds Barley genotype ZDM02064 CDS from gene projection Mar 2020 na 45,050 47.77 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) genotype ZDM02064 derived from gene projection.

Barley pan-genome proteins

Internal BLAST ID Name Version Date Source Pubmed ID #Sequences #Bases
shape_barke_pep Barley cultivar 'Barke' protein sequences from denovo gene prediction na 51,037 16.32 Mbp
shape_h10350_pep Barley accession HOR 10350 protein sequences from denovo gene prediction na 50,312 16.38 Mbp
shape_morex_pep Barley cultivar 'Morex' protein sequences from denovo gene prediction na 63,658 19.03 Mbp

Brassica

Internal BLAST ID Name Version Date Source Pubmed ID #Sequences #Bases
bassica_darmor-bzh.chr Brassica napus Darmor-bzh v10 pseudomolecule assembly v10 Jul 2020 ENA 33319912 237 923.8 Mbp
Description: The combination of long-reads and long-range information to produce genome assemblies is now accepted as a common standard. This strategy not only allow to access the gene catalogue of a given species but also reveals the architecture and organisation of chromosomes, including complex regions like telomeres and centromeres. The Brassica genus is not exempt and many assemblies based on long reads are now available. The reference genome for Brassica napus, Darmor-bzh, which was published in 2014, has been produced using short-reads and its contiguity was extremely low if compared to current assemblies of the Brassica genus. Here, we report the new long-reads assembly of Darmor-bzh genome (Brassica napus) generated by combining long-reads sequencing data, optical and genetic maps.

Rye

Internal BLAST ID Name Version Date Source Pubmed ID #Sequences #Bases
rye_lo7.cds.HC Secale cereale Lo7 - HC gene models v1 Feb 2019 e!DAL-PGP 34,441 44.18 Mbp
rye_lo7.cds.LC Secale cereale Lo7 - LC gene models v1 Feb 2019 e!DAL-PGP 22,781 14.49 Mbp
rye_lo7.cds.all Secale cereale Lo7 - all gene models v1 Feb 2019 e!DAL-PGP 57,222 58.67 Mbp
rye_lo7.wgs Secale cereale Lo7 - pseudomolecules v1 Dec 2018 ENA 8 6.74 Gbp
ryeexp_assembly2 RNA-seq contigs v1 Jun 2016 na 21951788 138,339 54.46 Mbp
Description: Reference for SNP discovery.
ryeexp_assembly3 RNA-seq contigs v1 - transcriptome reference na 115,400 56.6 Mbp
ryesel_lo7.v2.wgs RYE-SELECT Lo7 WGS contigs version 2 v2 Dec 2016 e!DAL-PGP 27888547 154,707 1.68 Gbp
ryesel_lo7.v3.cds RYE-SELECT Lo7 gene models version 3 v3 Mar 2016 na 27,784 25.85 Mbp
tri_0B Trinity assembly 0B Dec 2012 na 107,534 103.39 Mbp
Description: All RNASeq contigs from rye with 0Bs. Dataset for research of B-chromosomes.
tri_4B Trinity assembly 4B Dec 2012 na 141,311 147.26 Mbp
Description: All RNASeq contigs from Rye with 4Bs. Dataset for research of B-chromosomes.
tri_Anth4B Anth 4B Trinity Jun 2014 na 81,209 97.54 Mbp
Description: Dataset for research of B-chromosomes
tri_TrSc4B TrSc 4B Trinity Jun 2014 na 87,987 112.18 Mbp
Description: Dataset for research of B-chromosomes
tri_allB Rye Bchromosome contigs Jan 2011 na 75,827 26.06 Mbp
Description: Assembly results computed at the HMGU for the dataset - All Reads from sorted Rye B chromosomes

Rye proteins

Internal BLAST ID Name Version Date Source Pubmed ID #Sequences #Bases
rye_lo7.pep.HC Secale cereale Lo7 - HC proteins v1 Feb 2019 na 34,441 14.73 Mbp
rye_lo7.pep.LC Secale cereale Lo7 - LC proteins v1 Feb 2019 na 22,781 4.83 Mbp
rye_lo7.pep.all Secale cereale Lo7 - all proteins v1 Feb 2019 na 57,222 19.56 Mbp
ryesel_lo7.v3.pep RYE-SELECT Lo7 gene models version 3 v3 Mar 2016 na 27,784 8.62 Mbp

Wheat

Internal BLAST ID Name Version Date Source Pubmed ID #Sequences #Bases
CS.refseq.chr Wheat cv. 'Chinese Spring' Pseudomolecules iwgsc_refseq_v1.0 Oct 2016 na 22 14.55 Gbp
CS.refseq.trans Wheat cv. 'Chinese Spring' HC and LC transcripts iwgsc_refseq_v1.0 May 2017 na 269,583 276.62 Mbp
Zavitan Wild emmer 'Zavitan' v2 Dec 2015 na 28684525 15 10.51 Gbp
Description: Tetraploid wild emmer cv. 'Zavitan' pseudomolecules (Dec 2015)

Wheat pan-genome

Internal BLAST ID Name Version Date Source Pubmed ID #Sequences #Bases
Arina Arina Lrfor Pseudomolecules v3.0 Aug 2018 ENA 33239791 135,719 14.65 Gbp
Description: Triticum aestivum cv. 'Arina Lrfor' pseudomolecules and unlocalised scaffolds
Arina_gp_cds Wheat cv. 'Arina Lrfor' gene projection CDS v3.0 na 33239791 120,967 139.5 Mbp
Cadenza Wheat cv. 'Cadenza' scaffolds v1.1 na 1,065,576 14.08 Gbp
Clair Wheat cv. 'Clair' scaffolds v1.1 na 1,216,421 14.3 Gbp
Jagger Wheat cv. 'Jagger' Pseudomolecules v1.1 May 2018 ENA 33239791 138,393 14.54 Gbp
Jagger_gp_cds Wheat cv. 'Jagger' gene projection CDS v1.1 na 33239791 119,461 138.31 Mbp
Julius Wheat cv. 'Julius' Pseudomolecules v1.0, MAGIC3 Aug 2017 ENA 33239791 98,541 14.39 Gbp
Julius_gp_cds Wheat cv. 'Julius' gene projection CDS v1.0, MAGIC3 na 33239791 119,135 138.05 Mbp
Lancer Wheat cv. 'Lancer' Pseudomolecules v1.0 Nov 2018 ENA 33239791 119,569 14.28 Gbp
Lancer_gp_cds Wheat cv. 'Longreach Lancer' gene projection CDS v1.0 na 33239791 120,045 138.8 Mbp
Landmark Wheat cv. 'CDC Landmark' Pseudomolecules v1.0 Aug 2017 ENA 33239791 106,140 14.43 Gbp
Landmark_gp_cds Wheat cv. 'CDC Landmark' gene projection CDS v1.0 na 33239791 119,027 138.24 Mbp
Mace Wheat cv. 'Mace' Pseudomolecules v1.0 Nov 2018 ENA 33239791 119,606 14.35 Gbp
Mace_gp_cds Wheat cv. 'Mace' gene projection CDS v1.0 Jul 2019 na 33239791 119,772 138.75 Mbp
Norin61 Wheat cv. 'Norin61' Pseudomolecules v1.1 Mar 2019 ENA 33239791 21,465 14.91 Gbp
Norin61_gp_cds Wheat cv. 'Norin61' gene projection CDS v1.1 na 33239791 118,734 138.08 Mbp
Paragon Wheat cv. 'Paragon' scaffolds v1.1 na 1,254,002 14.44 Gbp
Robigus Wheat cv. 'Robigus' scaffolds v1.1 na 1,079 455.67 Mbp
SY Mattis Wheat cv. 'SY Mattis' Pseudomolecules v1 Oct 2018 ENA 33239791 705,997 14.88 Gbp
SY Mattis_gp_cds Wheat cv. 'Chinese spring' gene projection CDS v1 na 33239791 123,075 142.1 Mbp
Spelt Triticum spelta accession PI:190962 Pseudomolecules v1.0 May 2019 ENA 33239791 145,069 14.44 Gbp
Spelt_gp_cds Triticum spelta accession PI:190962 gene projection CDS v1.0 na 33239791 120,104 138.71 Mbp
Stanley Wheat cv. 'CDC Stanley' Pseudomolecules v1.2 Sep 2018 ENA 33239791 104,381 14.46 Gbp
Stanley_gp_cds Wheat cv. 'CDC Stanley' gene projection CDS v1.2 na 33239791 119,377 138.5 Mbp
Weebill Wheat cv. 'Weebill 1' Scaffolds v1 na 1,411,939 14.2 Gbp

Wheat pan-genome proteins

Internal BLAST ID Name Version Date Source Pubmed ID #Sequences #Bases
Arina_gp_pep Wheat cv. 'Arina Lrfor' gene projection proteins v3.0 na 33239791 120,967 46.5 Mbp
Jagger_gp_pep Wheat cv. 'Jagger' gene projection proteins v1.1 na 33239791 119,461 46.1 Mbp
Julius_gp_pep Wheat cv. 'Julius' gene projection proteins v1.0 na 33239791 119,135 46.01 Mbp
Lancer_gp_pep Wheat cv. 'Longreach Lancer' gene projection proteins v1.0 na 33239791 120,045 46.26 Mbp
Landmark_gp_pep Wheat cv. 'CDC Landmark' gene projection proteins v1.0 na 33239791 119,027 46.08 Mbp
Mace_gp_pep Wheat cv. 'Mace' gene projection proteins v1.0 na 33239791 119,772 46.25 Mbp
Norin61_gp_pep Wheat cv. 'Norin61' gene projection proteins v1.1 na 33239791 118,734 46.02 Mbp
SY Mattis_gp_pep Wheat cv. 'Chinese spring' gene projection proteins v1.0 na 33239791 123,075 47.37 Mbp
Spelt_gp_pep Triticum spelta accession PI:190962 gene projection proteins v1.0 na 33239791 120,104 46.23 Mbp
Stanley_gp_pep Wheat cv. 'CDC Stanley' gene projection proteins v1.2 na 33239791 119,377 46.16 Mbp