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Barley

File Name Version Date Source Pubmed ID #Sequences #Bases
Barley Agilent Array - Transcript data from HarvEST assembly 35 46,848 40.06 Mbp
Barley Agilent Array - Transcript data from HarvEST assembly 35 Jan 2012 25617470 21415278 22935196 46,848 40.06 Mbp
Description: Transcript data from HarvEST assembly 35, two RNAseq experiments (Kohl et al., 2012; Thiel et al., 2012), and a full-length cDNA collection (Matsumoto et al., 2011) were assembled to 46,114 unique barley contigs. Unambiguous 60bp oligomer probes were derived using eArray (Agilent Technologies, Santa Clara, USA). For a detailed description see Kohl et al., 2015. Microarray design is available at EMBL-EBI ArrayExpress, accession A-MTAB-530. Best hits from BLASTx similarity searches against UniRef90, and high-confidence (HC) genes of the barley genome (2012) are included in the header.
Barley BAC Assemblies v1.0, IBSC_v2 Jun 2015 26801048 850,266 11.3 Gbp
Barley Illumina BAC Contigs Jun 2015 26801048 2,183 277.16 Mbp
Barley cv. 'Golden Promise' CDS v1 42,464 45.11 Mbp
Barley cv. 'Golden Promise' pseudomolecules v1 8 4.13 Gbp
454BacContigs Morex IBSC_v1 IBSC_v1 Jan 2012 23075845 86,251 512.64 Mbp
Description: Mira assemblies for 4,095 barley BAC Clones. BACs were barcoded and sequenced in pools using either Roche 454 GS FLX or FLX Titanium Platform.
Barley full-length cDNAs derived from 12 clone libraries IBSC_v1 May 2011 21415278 28,622 47.57 Mbp
Barley Morex HC cds IBSC_v1 IBSC_v1 Mar 2012 26,159 31.89 Mbp
Barley Morex LC cds IBSC_v1 IBSC_v1 Mar 2012 53,220 17.0 Mbp
Barley Morex Pseudomolecule Contigs v1.0, IBSC_v2 Aug 2015 464,895 4.79 Gbp
Barley Morex Pseudomolecules Aug 2015 8 4.83 Gbp
IPK barley ESTs 206,633 106.72 Mbp
Description: EST sequences of IPK barley cDNA clones (see https://apex.ipk-gatersleben.de/apex/f?p=CREST)
Barley Morex Exome Capture Regions 10x Apr 2018 23889683 168,097 48.36 Mbp
Description: Sequence fragments at least 20bp in size from Morex WGS contigs that had at least 10x coverage in captured samples from 13 barley cultivars.
Barley Morex Exome Capture Regions 5x Apr 2018 23889683 207,448 67.7 Mbp
Description: Sequence fragments at least 20bp in size from Morex WGS contigs that had at least 5x coverage in captured samples from 13 barley cultivars.
Barley Morex assembly_WGS IBSC_v1 IBSC_v1 Oct 2012 23075845 2,670,738 1.87 Gbp
Description: Assembly from Whole Genome Shotgun sequencing of barley, cultivar Morex. Illumina Paired End 500 and Mate Pair 2500, total sequencing depth ~55x.
BacEndSequences IBSC_v1 IBSC_v1 May 2012 23075845 571,814 373.55 Mbp
Description: Sanger sequenced ends of 304,523 barley BAC Clones.
Barley Genomic -start at 1st exon end of last exon- HC Genes Morex v1.0, IBSC_v2 v1.0, IBSC_v2 26801048 39,734 38.49 Mbp
Barley Genomic -start at 1st exon end of last exon- LC Genes Morex v1.0, BSC_v2 v1.0, IBSC_v2 28447635 28448065 41,545 16.16 Mbp
Barley Pseudomolecules Masked Morex v1.0, IBSC_v2 v1.0, IBSC_v2 Apr 2016 28447635 28448065 8 4.34 Gbp
Barley CDS LC Morex v1.0, IBSC_v2 v1.0, IBSC_v2 28447635 28448065 40,819 92.98 Mbp
Barley pseudomolecules Contigs Masked Morex v1.0, IBSC_v2 v1.0, IBSC_v2 28447635 28448065 464,895 4.79 Gbp
Barley pseudomolecules Masked Morex v1.0, IBSC_v2 v1.0, IBSC_v2 28447635 28448065 8 4.83 Gbp
Barley representative Transcripts HC v1.0, IBSC_v2 28447635 28448065 39,734 59.56 Mbp
Barley representative Transcripts LC v1.0, IBSC_v2 28447635 28448065 41,949 39.77 Mbp
Barley Pseudomolecules Morex v2.0 2019 v2.0 Jul 2019 e!DAL-PGP 31849336 8 4.34 Gbp
Barley cv. Morex all CDS v2.0 Aug 2019 e!DAL-PGP 31849336 63,658 57.08 Mbp
Barley Morex HC CDS v1.0, IBSC_v2 May 2016 39,734 38.49 Mbp
Description: Genomic [start at 1st exon end of last exon] HC Genes (May 2016)
Barley Morex LC CDS v1.0, IBSC_v2 May 2016 41,545 16.16 Mbp
Description: Genomic [start at 1st exon end of last exon] LC Genes (May 2016)
Barley CDS HC Morex v1.0, IBSC_v2 v1.0, IBSC_v2 May 2016 39,734 238.84 Mbp
Barley CDS LC Morex v1.0, IBSC_v2 v1.0, IBSC_v2 May 2016 40,819 92.98 Mbp
Barley Pseudomolecule Contigs masked Morex v1.0, IBSC_v2 v1.0, IBSC_v2 Apr 2016 464,895 4.79 Gbp
Barley Pseudomolecules masked Morex v1.0, IBSC_v2 v1.0, IBSC_v2 Apr 2016 8 4.83 Gbp
Barley representative Transcripts HC v1.0, IBSC_v2 May 2016 39,734 59.56 Mbp
Barley representative Transcripts LC v1.0, IBSC_v2 May 2016 41,949 39.77 Mbp
Barley pseudomolecules Morex v3.0 V3 Jul 2020 e!DAL-PGP 8 4.23 Gbp
Description: Chromosomes 1H-7H. Unplaced scaffolds are merged into an additional artifical pseudomolecule 'chrUn'.
Barley all CDS Morex v3.0 V3 Jul 2020 e!DAL-PGP 83,990 71.84 Mbp
Barley pseudomolecules 1-7H and unplaced scaffolds Morex v3.0 V3 Jul 2020 ENA 290 4.23 Gbp
Description: In comparison to assembly 'morex_v3' this version of the Barley cv. Morex V3 consists of pseudomolecules 1H-7H. Artificial chromosomes 'chrUn' is represented by a set of unplaced scaffolds.
Barley Barke assembly_WGS Oct 2012 23075845 2,742,077 2.02 Gbp
Description: Assembly from Whole Genome Shotgun sequencing of barley, cultivar Barke. Illumina Paired End 500, sequencing depth ~30x.
Barley Bowman assembly_WGS Oct 2012 ENA 23075845 2,077,901 1.78 Gbp
Description: Assembly from Whole Genome Shotgun sequencing of barley, cultivar Bowman. Illumina Paired End 500, sequencing depth ~35x.

Barley proteins

File Name Version Date Source Pubmed ID #Sequences #Bases
Barley HC Proteins IBSC_v1 IBSC_1 Mar 2012 23075845 23998490 26,159 10.63 Mbp
Description: Barley gene annotations derived from the Morex 55x WGS sequence.In general, this gene set is a combination of RNA-seq-derived and barley flCDNAs-derived predictions. Per gene locus, only one representative gene model was selected (in case of alternative transcripts structures).Gene models were filtered for high-confidence (HC) and low-confidence (LC) predictions based on sequence homology to other angiosperm proteins (OrthoMCL and BLAST used). Both sets contain POPSEQ anchoring information and Blast2GO annotations. WARNING - This gene set is likely to be incomplete with respect to the barley full gene complement and many genes may be truncated (not full length) due to the WGS assembly sequence structure!
Barley LC Proteins IBSC_v1 IBSC_v1 Mar 2012 23075845 23998490 53,220 5.67 Mbp
Description: Barley gene annotations derived from the Morex 55x WGS sequence.In general, this gene set is a combination of RNA-seq-derived and barley flCDNAs-derived predictions. Per gene locus, only one representative gene model was selected (in case of alternative transcripts structures).Gene models were filtered for high-confidence (HC) and low-confidence (LC) predictions based on sequence homology to other angiosperm proteins (OrthoMCL and BLAST used). Both sets contain POPSEQ anchoring information and Blast2GO annotations. WARNING - This gene set is likely to be incomplete with respect to the barley full gene complement and many genes may be truncated (not full length) due to the WGS assembly sequence structure!
Barley HC Proteins Morex v1.0, IBSC_v2 v1.0, IBSC_v2 May 2016 26801048 39,734 12.83 Mbp
Barley LC Proteins Morex v1.0, IBSC_v2 v1.0, IBSC_v2 May 2016 26801048 41,545 5.39 Mbp
Morex v2.0 proteins v2.0 Aug 2019 e!DAL-PGP 31849336 63,658 19.03 Mbp
Description: Morex proteins, both HC and LC
Barley HC Proteins Morex V3 V3 Jul 2020 e!DAL-PGP 37,963 15.03 Mbp
Barley LC Proteins Morex V3 V3 Jul 2020 e!DAL-PGP 45,698 8.87 Mbp
Barley all Proteins Morex V3 V3 Jul 2020 e!DAL-PGP 83,661 23.9 Mbp

Barley pan-genome

File Name Version Date Source Pubmed ID #Sequences #Bases
Barley accession HOR 8148 pseudomolecules v1 May 2021 ENA 33239781 20,454 4.34 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 8148 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley accession HOR 8148 CDS from gene projection Mar 2020 33239781 45,026 47.58 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 8148 derived from gene projection.
Barley cultivar 'Akashinriki' pseudomolecules v1 Dec 2019 ENA 33239781 39,950 4.37 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Akashinriki' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley cultivar 'Akashinriki' CDS from gene projection Mar 2020 33239781 44,446 46.79 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Akashinriki derived from gene projection.
Barley genotype B1K_04_12_FT11 pseudomolecules v1 Dec 2019 ENA 33239781 22,357 4.27 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) genotype B1K_04_12_FT11 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley genotype B1K_04_12_FT11 CDS from gene projection Mar 2020 33239781 44,566 47.32 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) genotype B1K_04_12_FT11 derived from gene projection.
Barley cultivar 'Barke' pseudomolecules v1 Dec 2019 ENA 33239781 22,261 4.2 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Barke' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley cultivar 'Barke' CDS from denovo gene prediction Mar 2020 33239781 51,037 48.98 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Barke derived from denovo gene prediction.
Barley cultivar 'Chiba' pseudomolecules v1 Dec 2019 ENA 33239781 50,067 4.28 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Chiba' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley cultivar 'Du Li Huang' pseudomolecules v1 Dec 2019 ENA 33239781 47,929 4.68 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Du Li Huang' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley cultivar 'Golden Promise' pseudomolecules v1 Apr 2020 ENA 52,651 4.06 Gbp
Description: Assembly version v1.0 (originally published by the James Hutton Institute) comprising chromosomes 1H to 7H and yet unplaced scaffolds.
Barley accession HOR 10350 pseudomolecules v1 Dec 2019 ENA 33239781 22,115 4.21 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 10350 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley accession HOR 10350 CDS from denovo gene prediction Mar 2020 33239781 31,454 38.48 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 10350 derived from denovo gene prediction.
Barley accession HOR 13821 pseudomolecules v1 Dec 2019 ENA 33239781 37,025 4.36 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 10350 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley accession HOR 13821 CDS from gene projection Mar 2020 33239781 44,714 47.36 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 13821 derived from gene projection.
Barley accession HOR 13942 pseudomolecules v1 Dec 2019 ENA 33239781 42,596 4.47 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 13821 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley accession HOR 13942 CDS from gene projection Mar 2020 33239781 44,718 47.14 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 13942 derived from gene projection.
Barley accession HOR 21599 pseudomolecules v1 Dec 2019 ENA 33239781 35,732 4.48 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 13942 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley accession HOR 21599 CDS from gene projection Mar 2020 33239781 44,456 47.13 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 21599 derived from gene projection.
Barley accession HOR 3081 pseudomolecules v1 Dec 2019 ENA 33239781 20,204 4.33 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 21599 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley accession HOR 3081 CDS from gene projection Mar 2020 33239781 45,146 47.85 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 3081 derived from gene projection.
Barley accession HOR 3365 pseudomolecules v1 Dec 2019 ENA 33239781 322,406 4.84 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 3081 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley accession HOR 3365 CDS from gene projection Mar 2020 33239781 47,588 48.26 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 3365 derived from gene projection.
Barley accession HOR 7552 pseudomolecules v1 Dec 2019 ENA 33239781 24,111 4.36 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 7552 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley accession HOR 7552 CDS from gene projection Mar 2020 33239781 44,641 47.25 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 7552 derived from gene projection.
Barley accession HOR 9043 pseudomolecules v1 Dec 2019 ENA 33239781 36,153 4.4 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 9043 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley accession HOR 9043 CDS from gene projection Mar 2020 33239781 45,028 47.61 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) accession HOR 9043 derived from gene projection.
Barley cultivar 'Hockett' pseudomolecules v1 Dec 2019 ENA 33239781 28,709 4.33 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) accession HOR 3365 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley cultivar 'Hockett' CDS from gene projection Mar 2020 33239781 46,450 49.49 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Hockett derived from gene projection.
Barley cultivar 'Igri' pseudomolecules v1 Dec 2019 ENA 33239781 21,911 4.33 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'Igri' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley cultivar 'Igri' CDS from gene projection Mar 2020 33239781 45,213 47.89 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Igri derived from gene projection.
Barley cultivar 'Morex' CDS from denovo gene prediction Mar 2020 33239781 63,658 57.08 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar Morex derived from denovo gene prediction.
Barley genotype OUN_333_BCC_747 pseudomolecules v1 Dec 2019 ENA 33239781 39,314 4.53 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) genotype OUN_333_BCC_747 constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley genotype OUN_333_BCC_747 CDS from gene projection Mar 2020 33239781 44,699 47.27 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) genotype OUN_333_BCC_747 derived from gene projection.
Barley cultivar 'RGT Planet' pseudomolecules v1 Dec 2019 ENA 33239781 20,793 4.34 Gbp
Description: Genome sequence assembly barley (Hordeum vulgare ssp. vulgare) cultivar 'RGT Planet' constructed with the TRITEX pipeline. Assembly contains chromosomes 1-7H and additional unplaced scaffolds.
Barley cultivar 'RGT Planet' CDS from gene projection Mar 2020 33239781 45,413 48.05 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) cultivar RGT_Planet derived from gene projection.
Barley genotype ZDM01467 CDS from gene projection Mar 2020 33239781 44,746 47.1 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) genotype ZDM01467 derived from gene projection.
Barley genotype ZDM02064 CDS from gene projection Mar 2020 33239781 45,050 47.77 Mbp
Description: CDS feature of barley (Hordeum vulgare ssp. vulgare) genotype ZDM02064 derived from gene projection.

Barley pan-genome proteins

File Name Version Date Source Pubmed ID #Sequences #Bases
Barley accession HOR 8148 proteins v1 Mar 2020 e!DAL-PGP 33239781 45,026 15.86 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
Barley cultivar 'Akashinriki' proteins v1 Mar 2020 e!DAL-PGP 33239781 44,446 15.6 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
Barley genotype B1K_04_12_FT11 proteins v1 Mar 2020 e!DAL-PGP 33239781 44,566 15.77 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
Barley cultivar 'Barke' protein sequences from denovo gene prediction v1 e!DAL-PGP 33239781 51,037 16.32 Mbp
Barley cultivar 'Golden Promise' proteins Apr 2021 42,464 15.04 Mbp
Barley accession HOR 10350 protein sequences from denovo gene prediction v1 Mar 2019 33239781 50,312 16.38 Mbp
Barley accession HOR 13821 proteins, internal IDs version! Mar 2020 e!DAL-PGP 33239781 44,714 15.79 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
Barley accession HOR 13942 proteins, internal IDs version! v1 Mar 2020 e!DAL-PGP 33239781 44,718 15.71 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
Barley accession HOR 21599 proteins v1 Mar 2020 e!DAL-PGP 33239781 44,456 15.71 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
Barley accession HOR 3081 proteins v1 Mar 2020 e!DAL-PGP 33239781 45,146 15.95 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
Barley accession HOR 3365 proteins Mar 2020 e!DAL-PGP 33239781 47,588 16.09 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
Barley accession HOR 7552 proteins v1 Mar 2020 e!DAL-PGP 33239781 44,641 15.75 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
Barley accession HOR 9043 proteins v1 Mar 2020 e!DAL-PGP 33239781 45,028 15.87 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
Barley cultivar 'Hockett' proteins v1 Mar 2020 e!DAL-PGP 33239781 46,450 16.5 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
Barley cultivar 'Igri' proteins v1 Mar 2020 e!DAL-PGP 33239781 45,213 15.96 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including self-projections).
Barley cultivar 'Morex' protein sequences from denovo gene prediction v1 Feb 2019 e!DAL-PGP 33239781 63,658 19.03 Mbp
Barley genotype OUN_333_BCC_747 proteins v1 Mar 2020 e!DAL-PGP 33239781 44,699 15.76 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).
Barley cultivar 'RGT Planet' proteins v1 Mar 2020 e!DAL-PGP 33239781 45,413 16.02 Mbp
Description: Protein-coding gene models were predicted for twenty genotypes by gene projection with de novo gene models of three genotypes (including “self-projections”).

Barley pan-genome v2

File Name Version Date Source Pubmed ID #Sequences #Bases
Barley accession 10TJ18 CDS features 39537924 49,888 57.62 Mbp
Barley accession 10TJ18 pseudomolecules 39537924 661 4.26 Gbp
Barley accession 10TJ18 transcript features 39537924 49,888 75.49 Mbp
Barley cultivar Aizu6 pseudomolecules 39537924 477 4.24 Gbp
Barley cultivar Aizu_6 CDS features 39537924 49,823 57.48 Mbp
Barley cultivar Aizu 6 transcript features 39537924 49,823 75.33 Mbp
Barley cultivar Akashinriki CDS features 39537924 51,312 58.2 Mbp
Barley cultivar Akashinriki pseudomolecules 39537924 639 4.25 Gbp
Barley cultivar Akashinriki transcript features 39537924 51,312 76.43 Mbp
Barley cultivar B1K-04-12 CDS features 39537924 50,750 57.48 Mbp
Barley cultivar B1K-04-12 transcript features 39537924 50,750 75.71 Mbp
Barley cultivar B1K-17-07 CDS features 39537924 48,663 56.07 Mbp
Barley cultivar B1K-17-07 transcript features 39537924 48,663 73.28 Mbp
Barley cultivar B1K-33-13 CDS features 39537924 48,209 55.47 Mbp
Barley cultivar B1K-33-13 transcript features 39537924 48,209 72.67 Mbp
Barley cultivar Barke CDS features 39537924 51,956 58.96 Mbp
Barley cultivar Barke V2 pseudomolecules 39537924 430 4.22 Gbp
Barley cultivar Barke transcript features 39537924 51,956 77.64 Mbp
Barley cultivar Bonus CDS features 39537924 50,611 58.66 Mbp
Barley cultivar Bonus pseudomolecules 39537924 1,387 4.25 Gbp
Barley cultivar Bonus transcript features 39537924 50,611 76.89 Mbp
Barley cultivar Bowman CDS features 39537924 50,356 58.6 Mbp
Barley cultivar Bowman pseudomolecules 39537924 817 4.25 Gbp
Barley cultivar Bowman transcript features 39537924 50,356 76.69 Mbp
Barley cultivar Chiba ZDM02064 pseudomolecules 39537924 605 4.28 Gbp
Barley cultivar Chikurin_Ibaraki CDS features 39537924 50,203 58.08 Mbp
Barley cultivar Chikurin Ibaraki pseudomolecules 39537924 888 4.25 Gbp
Barley cultivar Chikurin Ibaraki transcript features 39537924 50,203 76.08 Mbp
Barley cultivar Du Li Huang ZDM01467 pseudomolecules 39537924 627 4.27 Gbp
Barley cultivar F2327 CDS features 39537924 48,382 55.89 Mbp
Barley cultivar F2327 transcript features 39537924 48,382 73.19 Mbp
Barley accession FT11 pseudomolecules 39537924 512 4.31 Gbp
Barley accession FT144 pseudomolecules 39537924 495 4.28 Gbp
Barley accession FT262 pseudomolecules 39537924 607 4.25 Gbp
Barley accession FT286 pseudomolecules 39537924 1,521 4.28 Gbp
Barley accession FT333 pseudomolecules 39537924 700 4.25 Gbp
Barley accession FT628 pseudomolecules 39537924 1,898 4.28 Gbp
Barley accession FT67 pseudomolecules 39537924 616 4.32 Gbp
Barley accession FT880 pseudomolecules 39537924 988 4.25 Gbp
Barley cultivar Foma CDS features 39537924 50,345 58.51 Mbp
Barley cultivar Foma pseudomolecules 39537924 729 4.24 Gbp
Barley cultivar Foma transcript features 39537924 50,345 76.68 Mbp
Barley cultivar GoldenMelon pseudomolecules 39537924 454 4.23 Gbp
Barley cultivar Golden Melon CDS features 39537924 50,904 58.77 Mbp
Barley cultivar Golden Melon transcript features 39537924 50,904 76.98 Mbp
Barley cultivar Golden Promise CDS features 39537924 52,812 60.74 Mbp
Barley cultivar Golden Promise pseudomolecules 39537924 1,852 4.25 Gbp
Barley cultivar Golden Promise transcript features 39537924 52,812 79.85 Mbp
Barley accession HID055 CDS features 39537924 48,534 55.92 Mbp
Barley accession HID055 pseudomolecules 39537924 788 4.3 Gbp
Barley accession HID055 transcript features 39537924 48,534 73.09 Mbp
Barley accession HID101 CDS features 39537924 48,518 55.89 Mbp
Barley accession HID101 pseudomolecules 39537924 1,073 4.25 Gbp
Barley accession HID101 transcript features 39537924 48,518 73.13 Mbp
Barley accession HID112XXI CDS features 39537924 48,510 56.06 Mbp
Barley accession HID112XXI transcript features 39537924 48,510 73.43 Mbp
Barley accession HID144 CDS features 39537924 48,238 55.51 Mbp
Barley accession HID144 transcript features 39537924 48,238 72.72 Mbp
Barley accession HID249 CDS features 39537924 48,332 55.84 Mbp
Barley accession HID249 pseudomolecules 39537924 757 4.25 Gbp
Barley accession HID249 transcript features 39537924 48,332 73.05 Mbp
Barley accession HID251 CDS features 39537924 48,393 55.78 Mbp
Barley accession HID251 transcript features 39537924 48,393 73.0 Mbp
Barley accession HID357 CDS features 39537924 48,487 56.0 Mbp
Barley accession HID357 pseudomolecules 39537924 838 4.28 Gbp
Barley accession HID357 transcript features 39537924 48,487 73.35 Mbp
Barley accession HID380 CDS features 39537924 50,137 57.81 Mbp
Barley accession HID380 pseudomolecules 39537924 1,098 4.25 Gbp
Barley accession HID380 transcript features 39537924 50,137 75.71 Mbp
Barley accession HID84 CDS features 39537924 48,355 55.72 Mbp
Barley accession HID84 transcript features 39537924 48,355 72.92 Mbp
Barley accession HOR 10096 CDS features 39537924 49,614 57.49 Mbp
Barley accession HOR 10096 pseudomolecules 39537924 651 4.26 Gbp
Barley accession HOR 10096 transcript features 39537924 49,614 75.17 Mbp
Barley accession HOR 10350 CDS features 39537924 51,307 58.19 Mbp
Barley accession HOR 10350 pseudomolecules 39537924 547 4.24 Gbp
Barley accession HOR 10350 transcript features 39537924 51,307 76.29 Mbp
Barley accession HOR 10892 CDS features 39537924 49,950 57.85 Mbp
Barley accession HOR 10892 pseudomolecules 39537924 266 4.25 Gbp
Barley accession HOR 10892 transcript features 39537924 49,950 75.81 Mbp
Barley accession HOR 1168 CDS features 39537924 49,936 57.84 Mbp
Barley accession HOR 1168 pseudomolecules 39537924 551 4.26 Gbp
Barley accession HOR 1168 transcript features 39537924 49,936 75.68 Mbp
Barley accession HOR 12184 CDS features 39537924 49,653 57.24 Mbp
Barley accession HOR 12184 pseudomolecules 39537924 615 4.23 Gbp
Barley accession HOR 12184 transcript features 39537924 49,653 75.0 Mbp
Barley accession HOR 12541 CDS features 39537924 48,916 56.79 Mbp
Barley accession HOR 12541 pseudomolecules 39537924 1,060 4.28 Gbp
Barley accession HOR 12541 transcript features 39537924 48,916 74.18 Mbp
Barley accession HOR 13594 CDS features 39537924 49,671 57.65 Mbp
Barley accession HOR 13594 pseudomolecules 39537924 595 4.24 Gbp
Barley accession HOR 13594 transcript features 39537924 49,671 75.45 Mbp
Barley accession HOR 13663 CDS features 39537924 49,812 57.74 Mbp
Barley accession HOR 13663 pseudomolecules 39537924 461 4.23 Gbp
Barley accession HOR 13663 transcript features 39537924 49,812 75.59 Mbp
Barley accession HOR 13821 CDS features 39537924 51,703 58.6 Mbp
Barley accession HOR 13821 pseudomolecules 39537924 691 4.26 Gbp
Barley accession HOR 13821 transcript features 39537924 51,703 77.14 Mbp
Barley accession HOR 13942 CDS features 39537924 51,464 58.18 Mbp
Barley accession HOR 13942 pseudomolecules 39537924 545 4.25 Gbp
Barley accession HOR 13942 transcript features 39537924 51,464 76.27 Mbp
Barley accession HOR 14061 CDS features 39537924 49,869 57.73 Mbp
Barley accession HOR 14061 pseudomolecules 39537924 733 4.24 Gbp
Barley accession HOR 14061 transcript features 39537924 49,869 75.63 Mbp
Barley accession HOR 14121 CDS features 39537924 49,476 57.31 Mbp
Barley accession HOR 14121 pseudomolecules 39537924 707 4.24 Gbp
Barley accession HOR 14121 transcript features 39537924 49,476 75.16 Mbp
Barley accession HOR 14273 CDS features 39537924 50,131 58.1 Mbp
Barley accession HOR 14273 pseudomolecules 39537924 778 4.28 Gbp
Barley accession HOR 14273 transcript features 39537924 50,131 76.06 Mbp
Barley accession HOR 1702 CDS features 39537924 49,842 57.69 Mbp
Barley accession HOR 1702 pseudomolecules 39537924 731 4.28 Gbp
Barley accession HOR 1702 transcript features 39537924 49,842 75.52 Mbp
Barley accession HOR 18321 CDS features 39537924 49,900 57.67 Mbp
Barley accession HOR 18321 pseudomolecules 39537924 580 4.24 Gbp
Barley accession HOR 18321 transcript features 39537924 49,900 75.5 Mbp
Barley accession HOR 19184 CDS features 39537924 49,724 57.33 Mbp
Barley accession HOR 19184 pseudomolecules 39537924 636 4.26 Gbp
Barley accession HOR 19184 transcript features 39537924 49,724 75.18 Mbp
Barley accession HOR 21256 CDS features 39537924 49,605 57.57 Mbp
Barley accession HOR 21256 pseudomolecules 39537924 442 4.24 Gbp
Barley accession HOR 21256 transcript features 39537924 49,605 75.41 Mbp
Barley accession HOR 21322 CDS features 39537924 49,770 57.57 Mbp
Barley accession HOR 21322 pseudomolecules 39537924 843 4.25 Gbp
Barley accession HOR 21322 transcript features 39537924 49,770 75.46 Mbp
Barley accession HOR 21595 CDS features 39537924 49,312 57.11 Mbp
Barley accession HOR 21595 pseudomolecules 39537924 699 4.24 Gbp
Barley accession HOR 21595 transcript features 39537924 49,312 74.78 Mbp
Barley accession HOR 21599 CDS features 39537924 51,249 58.11 Mbp
Barley accession HOR 21599 pseudomolecules 39537924 411 4.23 Gbp
Barley accession HOR 21599 transcript features 39537924 51,249 76.43 Mbp
Barley accession HOR 2180 CDS features 39537924 48,611 55.63 Mbp
Barley accession HOR 2180 pseudomolecules 39537924 566 4.22 Gbp
Barley accession HOR 2180 transcript features 39537924 48,611 72.87 Mbp
Barley accession HOR 2779 CDS features 39537924 49,777 57.48 Mbp
Barley accession HOR 2779 pseudomolecules 39537924 805 4.27 Gbp
Barley accession HOR 2779 transcript features 39537924 49,777 75.31 Mbp
Barley accession HOR 2830 CDS features 39537924 49,411 57.22 Mbp
Barley accession HOR 2830 pseudomolecules 39537924 430 4.22 Gbp
Barley accession HOR 2830 transcript features 39537924 49,411 74.85 Mbp
Barley accession HOR 3081 CDS features 39537924 51,257 58.23 Mbp
Barley accession HOR 3081 pseudomolecules 39537924 565 4.24 Gbp
Barley accession HOR 3081 transcript features 39537924 51,257 76.73 Mbp
Barley accession HOR 3365 CDS features 39537924 51,374 58.39 Mbp
Barley accession HOR 3365 pseudomolecules 39537924 604 4.25 Gbp
Barley accession HOR 3365 transcript features 39537924 51,374 76.6 Mbp
Barley accession HOR 3474 CDS features 39537924 49,668 57.32 Mbp
Barley accession HOR 3474 pseudomolecules 39537924 797 4.28 Gbp
Barley accession HOR 3474 transcript features 39537924 49,668 75.16 Mbp
Barley accession HOR 4224 CDS features 39537924 50,297 58.23 Mbp
Barley accession HOR 4224 pseudomolecules 39537924 1,655 4.26 Gbp
Barley accession HOR 4224 transcript features 39537924 50,297 76.24 Mbp
Barley accession HOR 495 CDS features 39537924 49,372 56.99 Mbp
Barley accession HOR 495 pseudomolecules 39537924 549 4.23 Gbp
Barley accession HOR 495 transcript features 39537924 49,372 74.67 Mbp
Barley accession HOR 6220 CDS features 39537924 49,852 57.76 Mbp
Barley accession HOR 6220 pseudomolecules 39537924 471 4.25 Gbp
Barley accession HOR 6220 transcript features 39537924 49,852 75.57 Mbp
Barley accession HOR 7172 CDS features 39537924 47,945 54.74 Mbp
Barley accession HOR 7172 pseudomolecules 39537924 356 4.24 Gbp
Barley accession HOR 7172 transcript features 39537924 47,945 71.65 Mbp
Barley accession HOR 7385 CDS features 39537924 49,776 57.45 Mbp
Barley accession HOR 7385 pseudomolecules 39537924 606 4.29 Gbp
Barley accession HOR 7385 transcript features 39537924 49,776 75.23 Mbp
Barley accession HOR 7552 CDS features 39537924 51,437 58.19 Mbp
Barley accession HOR 7552 pseudomolecules 39537924 618 4.27 Gbp
Barley accession HOR 7552 transcript features 39537924 51,437 76.93 Mbp
Barley accession HOR 8117 CDS features 39537924 50,002 57.98 Mbp
Barley accession HOR 8117 pseudomolecules 39537924 638 4.24 Gbp
Barley accession HOR 8117 transcript features 39537924 50,002 75.88 Mbp
Barley accession HOR 8148 CDS features 39537924 55,975 62.88 Mbp
Barley accession HOR 8148 pseudomolecules 39537924 10,476 4.76 Gbp
Barley accession HOR 8148 transcript features 39537924 55,975 82.97 Mbp
Barley accession HOR 9043 CDS features 39537924 51,343 58.25 Mbp
Barley accession HOR 9043 pseudomolecules 39537924 407 4.25 Gbp
Barley accession HOR 9043 transcript features 39537924 51,343 77.06 Mbp
Barley accession HOR 9972 CDS features 39537924 49,501 57.28 Mbp
Barley accession HOR 9972 pseudomolecules 39537924 629 4.26 Gbp
Barley accession HOR 9972 transcript features 39537924 49,501 74.95 Mbp
Barley cultivar Hockett CDS features 39537924 51,670 58.8 Mbp
Barley cultivar Hockett pseudomolecules 39537924 901 4.24 Gbp
Barley accession Hockett transcript features 39537924 51,670 77.66 Mbp
Barley cultivar Igri CDS features 39537924 51,656 58.68 Mbp
Barley cultivar Igri pseudomolecules 39537924 624 4.24 Gbp
Barley cultivar Igri transcript features 39537924 51,656 77.08 Mbp
Barley cultivar Maximus CDS features 39537924 50,406 58.44 Mbp
Barley cultivar Maximus pseudomolecules 39537924 643 4.25 Gbp
Barley cultivar Maximus transcript features 39537924 50,406 76.49 Mbp
Barley cultivar Morex CDS features 39537924 54,107 61.05 Mbp
Barley cultivar Morex transcript features 39537924 54,107 79.05 Mbp
Barley cultivar Morex version 3 pseudomolecules 39537924 290 4.23 Gbp
Barley cultivar OUN333 CDS features 39537924 51,460 58.46 Mbp
Barley accession OUN333 pseudomolecules 39537924 406 4.25 Gbp
Barley cultivar OUN333 transcript features 39537924 51,460 77.31 Mbp
Barley cultivar RGT_Planet CDS features 39537924 52,333 59.2 Mbp
Barley cultivar RGT Planet pseudomolecules 39537924 867 4.27 Gbp
Barley cultivar RGT Planet transcript features 39537924 52,333 77.92 Mbp
Barley accession WBDC078 CDS features 39537924 48,446 55.96 Mbp
Barley accession WBDC078 transcript features 39537924 48,446 73.19 Mbp
Barley accession WBDC103 CDS features 39537924 48,007 55.37 Mbp
Barley accession WBDC103 transcript features 39537924 48,007 72.36 Mbp
Barley accession WBDC133 CDS features 39537924 48,310 55.73 Mbp
Barley accession WBDC133 transcript features 39537924 48,310 72.91 Mbp
Barley accession WBDC184 CDS features 39537924 48,389 55.63 Mbp
Barley accession WBDC184 transcript features 39537924 48,389 72.77 Mbp
Barley accession WBDC199 CDS features 39537924 48,284 55.82 Mbp
Barley accession WBDC199 transcript features 39537924 48,284 73.05 Mbp
Barley accession WBDC207 CDS features 39537924 48,480 55.97 Mbp
Barley accession WBDC207 transcript features 39537924 48,480 73.25 Mbp
Barley accession WBDC237 CDS features 39537924 48,479 55.82 Mbp
Barley accession WBDC237 transcript features 39537924 48,479 73.08 Mbp
Barley accession WBDC348 CDS features 39537924 48,355 55.6 Mbp
Barley accession WBDC348 transcript features 39537924 48,355 72.68 Mbp
Barley accession WBDC349 CDS features 39537924 48,555 55.93 Mbp
Barley accession WBDC349 transcript features 39537924 48,555 73.16 Mbp
Barley accession WBDC 078 pseudomolecules 39537924 712 4.25 Gbp
Barley accession WBDC 103 pseudomolecules 39537924 635 4.28 Gbp
Barley accession WBDC 133 pseudomolecules 39537924 1,119 4.26 Gbp
Barley accession WBDC 184 pseudomolecules 39537924 718 4.31 Gbp
Barley accession WBDC 199 pseudomolecules 39537924 643 4.25 Gbp
Barley accession WBDC 207 pseudomolecules 39537924 611 4.26 Gbp
Barley accession WBDC 237 pseudomolecules 39537924 556 4.27 Gbp
Barley accession WBDC 348 pseudomolecules 39537924 643 4.29 Gbp
Barley accession WBDC 349 pseudomolecules 39537924 556 4.28 Gbp
Barley accession ZDM01467 CDS features 39537924 51,337 58.27 Mbp
Barley accession ZDM01467 transcript features 39537924 51,337 76.39 Mbp
Barley accession ZDM02064 CDS features 39537924 51,330 58.16 Mbp
Barley accession ZDM02064 transcript features 39537924 51,330 76.45 Mbp

Barley pan-genome v2 proteins

File Name Version Date Source Pubmed ID #Sequences #Bases
Barley accession 10TJ18 protein features 39537924 49,888 19.21 Mbp
Barley cultivar Aizu 6 protein features 39537924 49,823 19.16 Mbp
Barley cultivar Akashinriki protein features 39537924 51,312 19.4 Mbp
Barley cultivar B1K-04-12 protein features 39537924 50,750 19.16 Mbp
Barley cultivar B1K-17-07 protein features 39537924 48,663 18.69 Mbp
Barley cultivar B1K-33-13 protein features 39537924 48,209 18.49 Mbp
Barley cultivar Barke protein features 39537924 51,956 19.65 Mbp
Barley cultivar Bonus protein features 39537924 50,611 19.55 Mbp
Barley cultivar Bowman protein features 39537924 50,356 19.53 Mbp
Barley cultivar Chikurin Ibaraki protein features 39537924 50,203 19.36 Mbp
Barley cultivar F2327 protein features 39537924 48,382 18.63 Mbp
Barley cultivar Foma protein features 39537924 50,345 19.5 Mbp
Barley cultivar Golden Melon protein features 39537924 50,904 19.59 Mbp
Barley cultivar Golden Promise protein features 39537924 52,812 20.25 Mbp
Barley accession HID055 protein features 39537924 48,534 18.64 Mbp
Barley accession HID101 protein features 39537924 48,518 18.63 Mbp
Barley accession HID112XXI protein features 39537924 48,510 18.69 Mbp
Barley accession HID144 protein features 39537924 48,238 18.5 Mbp
Barley accession HID249 protein features 39537924 48,332 18.61 Mbp
Barley accession HID251 protein features 39537924 48,393 18.59 Mbp
Barley accession HID357 protein features 39537924 48,487 18.67 Mbp
Barley accession HID380 protein features 39537924 50,137 19.27 Mbp
Barley accession HID84 protein features 39537924 48,355 18.57 Mbp
Barley accession HOR 10096 protein features 39537924 49,614 19.16 Mbp
Barley accession HOR 10350 protein features 39537924 51,307 19.4 Mbp
Barley accession HOR 10892 protein features 39537924 49,950 19.28 Mbp
Barley accession HOR 1168 protein features 39537924 49,936 19.28 Mbp
Barley accession HOR 12184 protein features 39537924 49,653 19.08 Mbp
Barley accession HOR 12541 protein features 39537924 48,916 18.93 Mbp
Barley accession HOR 13594 protein features 39537924 49,671 19.22 Mbp
Barley accession HOR 13663 protein features 39537924 49,812 19.25 Mbp
Barley accession HOR 13821 protein features 39537924 51,703 19.53 Mbp
Barley accession HOR 13942 protein features 39537924 51,464 19.39 Mbp
Barley accession HOR 14061 protein features 39537924 49,869 19.24 Mbp
Barley accession HOR 14121 protein features 39537924 49,476 19.1 Mbp
Barley accession HOR 14273 protein features 39537924 50,131 19.37 Mbp
Barley accession HOR 1702 protein features 39537924 49,842 19.23 Mbp
Barley accession HOR 18321 protein features 39537924 49,900 19.22 Mbp
Barley accession HOR 19184 protein features 39537924 49,724 19.11 Mbp
Barley accession HOR 21256 protein features 39537924 49,605 19.19 Mbp
Barley accession HOR 21322 protein features 39537924 49,770 19.19 Mbp
Barley accession HOR 21595 protein features 39537924 49,312 19.04 Mbp
Barley accession HOR 21599 protein features 39537924 51,249 19.37 Mbp
Barley accession HOR 2180 protein features 39537924 48,611 18.54 Mbp
Barley accession HOR 2779 protein features 39537924 49,777 19.16 Mbp
Barley accession HOR 2830 protein features 39537924 49,411 19.07 Mbp
Barley accession HOR 3081 protein features 39537924 51,257 19.41 Mbp
Barley accession HOR 3365 protein features 39537924 51,374 19.46 Mbp
Barley accession HOR 3474 protein features 39537924 49,668 19.11 Mbp
Barley accession HOR 4224 protein features 39537924 50,297 19.41 Mbp
Barley accession HOR 495 protein features 39537924 49,372 19.0 Mbp
Barley accession HOR 6220 protein features 39537924 49,852 19.25 Mbp
Barley accession HOR 7172 protein features 39537924 47,945 18.25 Mbp
Barley accession HOR 7385 protein features 39537924 49,776 19.15 Mbp
Barley accession HOR 7552 protein features 39537924 51,437 19.4 Mbp
Barley accession HOR 8117 protein features 39537924 50,002 19.33 Mbp
Barley accession HOR 8148 protein features 39537924 55,975 20.96 Mbp
Barley accession HOR 9043 protein features 39537924 51,343 19.42 Mbp
Barley accession HOR 9972 protein features 39537924 49,501 19.09 Mbp
Barley cultivar Hockett protein features 39537924 51,670 19.6 Mbp
Barley cultivar Igri protein features 39537924 51,656 19.56 Mbp
Barley cultivar Maximus protein features 39537924 50,406 19.48 Mbp
Barley cultivar Morex protein features 39537924 54,107 20.35 Mbp
Barley cultivar OUN333 protein features 39537924 51,460 19.49 Mbp
Barley cultivar RGT Planet protein features 39537924 52,333 19.73 Mbp
Barley accession WBDC078 protein features 39537924 48,446 18.65 Mbp
Barley accession WBDC103 protein features 39537924 48,007 18.46 Mbp
Barley accession WBDC133 protein features 39537924 48,310 18.58 Mbp
Barley accession WBDC184 protein features 39537924 48,389 18.54 Mbp
Barley accession WBDC199 protein features 39537924 48,284 18.61 Mbp
Barley accession WBDC207 protein features 39537924 48,480 18.66 Mbp
Barley accession WBDC237 protein features 39537924 48,479 18.61 Mbp
Barley accession WBDC348 protein features 39537924 48,355 18.53 Mbp
Barley accession WBDC349 protein features 39537924 48,555 18.64 Mbp
Barley accession ZDM01467 protein features 39537924 51,337 19.42 Mbp
Barley accession ZDM02064 protein features 39537924 51,330 19.39 Mbp
Complete set of all BPGv2 barley genotypes - 3797824 protein features 3,797,824 1.46 Gbp

Brassica

File Name Version Date Source Pubmed ID #Sequences #Bases
Brassica napus Darmor-bzh v10 pseudomolecule assembly v10 Jul 2020 ENA 33319912 237 923.8 Mbp
Description: The combination of long-reads and long-range information to produce genome assemblies is now accepted as a common standard. This strategy not only allow to access the gene catalogue of a given species but also reveals the architecture and organisation of chromosomes, including complex regions like telomeres and centromeres. The Brassica genus is not exempt and many assemblies based on long reads are now available. The reference genome for Brassica napus, Darmor-bzh, which was published in 2014, has been produced using short-reads and its contiguity was extremely low if compared to current assemblies of the Brassica genus. Here, we report the new long-reads assembly of Darmor-bzh genome (Brassica napus) generated by combining long-reads sequencing data, optical and genetic maps.
Brassica napus Darmor-bzh v10 chr 237 923.8 Mbp

Bulbosum pangenome v1

File Name Version Date Source Pubmed ID #Sequences #Bases
Hordeum bulbosum accession 'A17' combined haplotypes protein features pgsb v4 combined 219,194 326.84 Mbp
Hordeum bulbosum accession'A17' haplotype 1 protein features pgsb v4 haplotype1 52,693 78.91 Mbp
Hordeum bulbosum accession'A17' haplotype 2 protein features pgsb v4 haplotype2 52,073 77.46 Mbp
Hordeum bulbosum accession'A17' haplotype 3 protein features pgsb v4 haplotype3 51,540 76.26 Mbp
Hordeum bulbosum accession'A17' haplotype 4 protein features pgsb v4 haplotype4 52,974 78.5 Mbp
Hordeum bulbosum accession 'A17 unanchored protein features pgsb v4 unanchored 9,914 15.7 Mbp
Hordeum bulbosum accession 'A40' combined haplotypes protein features pgsb v4 combined 169,214 252.63 Mbp
Hordeum bulbosum accession'A40' haplotype 1 protein features pgsb v4 haplotype1 51,982 77.28 Mbp
Hordeum bulbosum accession'A40' haplotype 2 protein features pgsb v4 haplotype2 52,728 78.34 Mbp
Hordeum bulbosum accession'A40' haplotype 3 protein features pgsb v4 haplotype3 52,400 78.96 Mbp
Hordeum bulbosum accession 'A40' haplotype 4 protein features pgsb v4 haplotype4 52,714 78.63 Mbp
Hordeum bulbosum accession 'A40' unanchored protein features pgsb v4 unanchored 11,790 18.38 Mbp
Hordeum bulbosum accession 'A42' combined haplotypes protein features pgsb v4 combined 221,782 329.4 Mbp
Hordeum bulbosum accession 'A42' haplotype 1 protein features pgsb v4 haplotype1 52,664 78.07 Mbp
Hordeum bulbosum accession 'A42' haplotype 2 protein features pgsb v4 haplotype2 51,701 76.56 Mbp
Hordeum bulbosum accession 'A42' haplotype 3 protein features pgsb v4 haplotype3 51,725 77.34 Mbp
Hordeum bulbosum accession 'A42' haplotype 4 protein features pgsb v4 haplotype4 51,080 76.39 Mbp
Hordeum bulbosum accession 'A42' unanchored protein features pgsb v4 unanchored 14,612 21.03 Mbp
Hordeum bulbosum accession 'FB19_001_1' combined haplotypes protein features pgsb v4 combined 225,129 342.56 Mbp
Hordeum bulbosum accession 'FB19_001_1' haplotype 1 protein features pgsb v4 haplotype1 52,256 79.52 Mbp
Hordeum bulbosum accession 'FB19_001_1' haplotype 2 protein features pgsb v4 haplotype2 56,135 84.96 Mbp
Hordeum bulbosum accession 'FB19_001_1' haplotype 3 protein features pgsb v4 haplotype3 54,426 82.46 Mbp
Hordeum bulbosum accession 'FB19_001_1' haplotype 4 protein features pgsb v4 haplotype4 52,083 78.91 Mbp
Hordeum bulbosum accession 'FB19_001_1' unanchored protein features pgsb v4 unanchored 10,229 16.72 Mbp
Hordeum bulbosum accession 'FB19_011_3' combined haplotypes protein features pgsb v4 combined 123,638 183.44 Mbp
Hordeum bulbosum accession 'FB19_011_3' haplotype 1 protein features pgsb v4 haplotype1 61,305 91.15 Mbp
Hordeum bulbosum accession 'FB19_011_3' haplotype 2 protein features pgsb v4 haplotype2 60,827 90.11 Mbp
Hordeum bulbosum accession 'FB19_011_3' unanchored protein features pgsb v4 unanchored 1,506 2.18 Mbp
Hordeum bulbosum accession 'FB19_028_3' combined haplotypes protein features pgsb v4 combined 231,433 351.22 Mbp
Hordeum bulbosum accession 'FB19_028_3' haplotype 1 protein features pgsb v4 haplotype1 55,200 84.13 Mbp
Hordeum bulbosum accession 'FB19_028_3' haplotype 2 protein features pgsb v4 haplotype2 57,314 86.66 Mbp
Hordeum bulbosum accession 'FB19_028_3' haplotype 3 protein features pgsb v4 haplotype3 54,511 82.69 Mbp
Hordeum bulbosum accession 'FB19_028_3' haplotype 4 protein features pgsb v4 haplotype4 54,967 83.19 Mbp
Hordeum bulbosum accession 'FB19_028_3' unanchored protein features pgsb v4 unanchored 9,441 14.56 Mbp
Hordeum bulbosum accession 'FB20_005_1' combined haplotypes protein features pgsb v4 combined 118,492 181.46 Mbp
Hordeum bulbosum accession 'FB20_005_1' haplotype 1 protein features pgsb v4 haplotype1 56,875 86.37 Mbp
Hordeum bulbosum accession 'FB20_005_1' haplotype 2 protein features pgsb v4 haplotype2 56,798 86.38 Mbp
Hordeum bulbosum accession 'FB20_005_1' unanchored protein features pgsb v4 unanchored 4,819 8.7 Mbp
Hordeum bulbosum accession 'FB20_029_7' combined haplotypes protein features pgsb v4 combined 120,449 184.59 Mbp
Hordeum bulbosum accession 'FB20_029_7' haplotype 1 protein features pgsb v4 haplotype1 57,591 87.56 Mbp
Hordeum bulbosum accession 'FB20_029_7' haplotype 2 protein features pgsb v4 haplotype2 58,183 88.22 Mbp
Hordeum bulbosum accession 'FB20_029_7' unanchored protein features pgsb v4 unanchored 4,675 8.8 Mbp
Hordeum bulbosum accession 'GRA2256_1' combined haplotypes protein features pgsb v4 combined 213,875 318.1 Mbp
Hordeum bulbosum accession 'GRA2256_1' haplotype 1 protein features pgsb v4 haplotype1 50,338 74.96 Mbp
Hordeum bulbosum accession 'GRA2256_1' haplotype 2 protein features pgsb v4 haplotype2 49,924 74.03 Mbp
Hordeum bulbosum accession 'GRA2256_1' haplotype 3 protein features pgsb v4 haplotype3 50,131 74.79 Mbp
Hordeum bulbosum accession 'GRA2256_1' haplotype 4 protein features pgsb v4 haplotype4 51,033 75.94 Mbp
Hordeum bulbosum accession 'GRA2256_1' unanchored protein features pgsb v4 unanchored 12,449 18.38 Mbp
Hordeum bulbosum accession 'PI365428' combined haplotypes protein features pgsb v4 combined 119,502 184.26 Mbp
Hordeum bulbosum accession 'PI365428' haplotype 1 protein features pgsb v4 haplotype1 57,457 86.86 Mbp
Hordeum bulbosum accession 'PI365428' haplotype 2 protein features pgsb v4 haplotype2 57,273 86.68 Mbp
Hordeum bulbosum accession 'PI365428' unanchored protein features pgsb v4 unanchored 4,772 10.72 Mbp

Bulbosum pangenome v1 proteins

File Name Version Date Source Pubmed ID #Sequences #Bases
Hordeum bulbosum accession 'A17' combined haplotypes protein features pgsb v4 combined 219,140 108.91 Mbp
Hordeum bulbosum accession'A17' haplotype 1 protein features pgsb v4 haplotype1 52,686 26.3 Mbp
Hordeum bulbosum accession'A17' haplotype 2 protein features pgsb v4 haplotype2 52,059 25.81 Mbp
Hordeum bulbosum accession'A17' haplotype 3 protein features pgsb v4 haplotype3 51,523 25.41 Mbp
Hordeum bulbosum accession'A17' haplotype 4 protein features pgsb v4 haplotype4 52,958 26.16 Mbp
Hordeum bulbosum accession 'A17 unanchored protein features pgsb v4 unanchored 9,914 5.22 Mbp
Hordeum bulbosum accession 'A40' combined haplotypes protein features pgsb v4 combined 221,555 110.49 Mbp
Hordeum bulbosum accession'A40' haplotype 1 protein features pgsb v4 haplotype1 51,970 25.76 Mbp
Hordeum bulbosum accession'A40' haplotype 2 protein features pgsb v4 haplotype2 52,717 26.11 Mbp
Hordeum bulbosum accession'A40' haplotype 3 protein features pgsb v4 haplotype3 52,387 26.31 Mbp
Hordeum bulbosum accession 'A40' haplotype 4 protein features pgsb v4 haplotype4 52,691 26.2 Mbp
Hordeum bulbosum accession 'A40' unanchored protein features pgsb v4 unanchored 11,790 6.11 Mbp
Hordeum bulbosum accession 'A42' combined haplotypes protein features pgsb v4 combined 221,723 109.76 Mbp
Hordeum bulbosum accession 'A42' haplotype 1 protein features pgsb v4 haplotype1 52,646 26.01 Mbp
Hordeum bulbosum accession 'A42' haplotype 2 protein features pgsb v4 haplotype2 51,686 25.51 Mbp
Hordeum bulbosum accession 'A42' haplotype 3 protein features pgsb v4 haplotype3 51,713 25.77 Mbp
Hordeum bulbosum accession 'A42' haplotype 4 protein features pgsb v4 haplotype4 51,066 25.46 Mbp
Hordeum bulbosum accession 'A42' unanchored protein features pgsb v4 unanchored 14,612 7.0 Mbp
Hordeum bulbosum accession 'FB19_001_1' combined haplotypes protein features pgsb v4 combined 225,113 114.17 Mbp
Hordeum bulbosum accession 'FB19_001_1' haplotype 1 protein features pgsb v4 haplotype1 52,253 26.51 Mbp
Hordeum bulbosum accession 'FB19_001_1' haplotype 2 protein features pgsb v4 haplotype2 56,127 28.31 Mbp
Hordeum bulbosum accession 'FB19_001_1' haplotype 3 protein features pgsb v4 haplotype3 54,425 27.49 Mbp
Hordeum bulbosum accession 'FB19_001_1' haplotype 4 protein features pgsb v4 haplotype4 52,079 26.3 Mbp
Hordeum bulbosum accession 'FB19_001_1' unanchored protein features pgsb v4 unanchored 10,229 5.56 Mbp
Hordeum bulbosum accession 'FB19_011_3' combined haplotypes protein features pgsb v4 combined 123,616 61.13 Mbp
Hordeum bulbosum accession 'FB19_011_3' haplotype 1 protein features pgsb v4 haplotype1 61,293 30.38 Mbp
Hordeum bulbosum accession 'FB19_011_3' haplotype 2 protein features pgsb v4 haplotype2 60,817 30.03 Mbp
Hordeum bulbosum accession 'FB19_011_3' unanchored protein features pgsb v4 unanchored 1,506 726 Kbp
Hordeum bulbosum accession 'FB19_028_3' combined haplotypes protein features pgsb v4 combined 231,409 117.05 Mbp
Hordeum bulbosum accession 'FB19_028_3' haplotype 1 protein features pgsb v4 haplotype1 55,192 28.04 Mbp
Hordeum bulbosum accession 'FB19_028_3' haplotype 2 protein features pgsb v4 haplotype2 57,310 28.88 Mbp
Hordeum bulbosum accession 'FB19_028_3' haplotype 3 protein features pgsb v4 haplotype3 54,501 27.56 Mbp
Hordeum bulbosum accession 'FB19_028_3' haplotype 4 protein features pgsb v4 haplotype4 54,965 27.73 Mbp
Hordeum bulbosum accession 'FB19_028_3' unanchored protein features pgsb v4 unanchored 9,441 4.84 Mbp
Hordeum bulbosum accession 'FB20_005_1' combined haplotypes protein features pgsb v4 combined 118,482 60.47 Mbp
Hordeum bulbosum accession 'FB20_005_1' haplotype 1 protein features pgsb v4 haplotype1 56,871 28.79 Mbp
Hordeum bulbosum accession 'FB20_005_1' haplotype 2 protein features pgsb v4 haplotype2 56,792 28.79 Mbp
Hordeum bulbosum accession 'FB20_005_1' unanchored protein features pgsb v4 unanchored 4,819 2.89 Mbp
Hordeum bulbosum accession 'FB20_029_7' combined haplotypes protein features pgsb v4 combined 120,441 61.52 Mbp
Hordeum bulbosum accession 'FB20_029_7' haplotype 1 protein features pgsb v4 haplotype1 57,588 29.19 Mbp
Hordeum bulbosum accession 'FB20_029_7' haplotype 2 protein features pgsb v4 haplotype2 58,178 29.41 Mbp
Hordeum bulbosum accession 'FB20_029_7' unanchored protein features pgsb v4 unanchored 4,675 2.93 Mbp
Hordeum bulbosum accession 'GRA2256_1' combined haplotypes protein features pgsb v4 combined 213,840 106.01 Mbp
Hordeum bulbosum accession 'GRA2256_1' haplotype 1 protein features pgsb v4 haplotype1 50,328 24.98 Mbp
Hordeum bulbosum accession 'GRA2256_1' haplotype 2 protein features pgsb v4 haplotype2 49,912 24.67 Mbp
Hordeum bulbosum accession 'GRA2256_1' haplotype 3 protein features pgsb v4 haplotype3 50,129 24.93 Mbp
Hordeum bulbosum accession 'GRA2256_1' haplotype 4 protein features pgsb v4 haplotype4 51,022 25.31 Mbp
Hordeum bulbosum accession 'GRA2256_1' unanchored protein features pgsb v4 unanchored 12,449 6.11 Mbp
Hordeum bulbosum accession 'PI365428' combined haplotypes protein features pgsb v4 combined 119,498 61.41 Mbp
Hordeum bulbosum accession 'PI365428' haplotype 1 protein features pgsb v4 haplotype1 57,455 28.95 Mbp
Hordeum bulbosum accession 'PI365428' haplotype 2 protein features pgsb v4 haplotype2 57,271 28.89 Mbp
Hordeum bulbosum accession 'PI365428' unanchored protein features pgsb v4 unanchored 4,772 3.57 Mbp

Faba

File Name Version Date Source Pubmed ID #Sequences #Bases
Vicia faba cv. 'Disco' v1 chromosomes chr 795 12.1 Gbp
Vicia faba genotype 'GCN077153' v1 chromosomes chr 36890232 873 11.98 Gbp
Vicia faba cv. 'Hedin/2' v1 CDS features cds 36890232 37,065 43.13 Mbp
Vicia faba cv. 'Hedin' v1 chromosomes chr 36890232 1,077 11.54 Gbp
Description: The faba genome was sequenced with PacBio HiFi long reads to 20-fold coverage and assembled 11.9 Gb of sequence, more than half of which was represented by contigs longer than 2.7 Mb. Linkage information afforded by a genetic map and chromosome conformation capture sequencing (Hi-C) data placed 11.2 Gb (94%) into chromosomal pseudomolecules.
Vicia faba cv. 'Rinrei' v1 chromosomes chr 917 11.99 Gbp
Vicia faba cv. 'Hedin/2' v2 CDS features cds e!DAL-PGP 55,280 63.76 Mbp
Description: We created gene annotation for the Vicia faba (Hedin/2) version 2 genome, using braker2 software with short and long read protocol (https://github.com/Gaius-Augustus/BRAKER/blob/master/docs/long_reads/long_read_protocol.md).
Vicia faba cv. 'Hedin/2' v2 chromosomes chr 2,299 11.96 Gbp

Faba proteins

File Name Version Date Source Pubmed ID #Sequences #Bases
Vicia faba cv. 'Hedin' v1 all proteins pep 37,065 14.34 Mbp
Vicia faba cv. 'Hedin' v2 all proteins pep e!DAL-PGP 55,280 21.2 Mbp
Description: We created gene annotation for the Vicia faba (Hedin/2) version 2 genome, using braker2 software with short and long read protocol (https://github.com/Gaius-Augustus/BRAKER/blob/master/docs/long_reads/long_read_protocol.md).

Oats

File Name Version Date Source Pubmed ID #Sequences #Bases
Avena atlantica CC7277 v1 pseudomolecules v1 ENA 2,195 3.69 Gbp
Avena eriantha BYU132 v1 pseudomolecules v1 ENA 2,652 3.78 Gbp
Avena insularis BYU209 v1 pseudomolecules v1 ENA 6,537 14.18 Gbp
Description: Genome sequence assembly (pseudomolecules) and structural annotation (both protein coding genes and TEs/repeats) of tetraploid (4x) Avena insularis (BYU209).
Avena insularis BYU209 v1 all CDS v1 e!DAL-PGP 136,548 132.54 Mbp
Avena insularis BYU209 v1 CDS HC v1 e!DAL-PGP 64,550 83.71 Mbp
Avena insularis BYU209 v1 CDS LC v1 e!DAL-PGP 71,998 48.83 Mbp
Avena longiglumis CN58138 v1 pseudomolecules v1 ENA 890 7.4 Gbp
Description: Genome sequence assembly (pseudomolecules) and structural annotation (both protein coding genes and TEs/repeats) of diploid (2x) Avena longiglumis (CN58138).
Avena longiglumis CN58138 v1.cds v1 e!DAL-PGP 85,326 84.84 Mbp
Avena longiglumis CN58138 v1 CDS HC v1 e!DAL-PGP 42,564 54.92 Mbp
Avena longiglumis CN58138 v1 CDS LC v1 e!DAL-PGP 42,762 29.92 Mbp
Avena sativa cv. Sang v1.1 all CDS v1,1 e!DAL-PGP 174,318 170.83 Mbp
Avena sativa cv. Sang v1.1 CDS HC v1,1 e!DAL-PGP 94,976 123.17 Mbp
Description: Structural annotation (both protein coding genes and TEs/repeats) of hexaploid (6x) Avena sativa (cv. Sang). Sang version 1.0 and 1.1 gene annotation differences - both annotation versions refer to the same genome assembly sequence (included with this release) and only differ in the addition of manually curated gene models (e.g. for the prolamin gene family) in release version 1.1. Gene identifiers have been kept stable between the two annotation versions wherever possible (that means, some genes may have been removed, merged or added in v1.1).
Avena sativa cv. Sang v1.1 CDS LC v1,1 e!DAL-PGP 79,342 47.66 Mbp
Description: Structural annotation (both protein coding genes and TEs/repeats) of hexaploid (6x) Avena sativa (cv. Sang). Sang version 1.0 and 1.1 gene annotation differences - both annotation versions refer to the same genome assembly sequence (included with this release) and only differ in the addition of manually curated gene models (e.g. for the prolamin gene family) in release version 1.1. Gene identifiers have been kept stable between the two annotation versions wherever possible (that means, some genes may have been removed, merged or added in v1.1).
Avena sativa cv. Sang v1 pseudomolecules v1 ENA 22 11.01 Gbp
Description: This data release contains the genome sequence assembly (pseudomolecules) and structural annotation (both protein coding genes and TEs/repeats) of hexaploid (6x) Avena sativa (cv. Sang) from the PanOat project.

Oats proteins

File Name Version Date Source Pubmed ID #Sequences #Bases
Avena insularis BYU209 v1 proteins HC v1 64,549 27.9 Mbp
Avena insularis BYU209 v1 proteins LC v1 44,250 9.06 Mbp
Avena insularis BYU209 v1 proteins v1 108,799 36.97 Mbp
Avena longiglumis CN58138 v1 proteins HC v1 42,562 18.3 Mbp
Avena longiglumis CN58138 v1 proteins LC v1 21,870 4.72 Mbp
Avena longiglumis CN58138 v1 proteins v1 64,432 23.02 Mbp
Avena sativa cv. Sang v1.1 proteins HC v1 94,967 41.06 Mbp
Avena sativa cv. Sang v1.1 proteins LC v1 78,756 15.74 Mbp
Avena sativa cv. Sang v1.1 proteins v1 173,723 56.8 Mbp
Avena sativa cv. Sang v1 proteins HC v1 94,954 41.05 Mbp
Avena sativa cv. Sang v1 proteins LC v1 78,753 15.74 Mbp
Avena sativa cv. Sang v1 proteins v1 173,707 56.79 Mbp

Rye

File Name Version Date Source Pubmed ID #Sequences #Bases
Secale cereale Lo7 - HC gene models v1 Feb 2019 e!DAL-PGP 33737754 34,441 44.18 Mbp
Secale cereale Lo7 - LC gene models v1 Feb 2019 e!DAL-PGP 33737754 22,781 14.49 Mbp
Secale cereale Lo7 - all gene models v1 Feb 2019 e!DAL-PGP 33737754 57,222 58.67 Mbp
Secale cereale Lo7 - pseudomolecules v1 Dec 2018 ENA 33737754 8 6.74 Gbp
RNA-seq contigs v1 Jun 2016 21951788 138,339 54.46 Mbp
Description: Reference for SNP discovery.
RNA-seq contigs v1 - transcriptome reference 21951788 115,400 56.6 Mbp
Description: This data was published in the year 2011 by the RYE-Express consortium and is described in Haseneyer et al. (2011). It is comprised by two FASTA references 'RYE-Express_Sce_Assembly02.fasta.gz' and 'RYE-Express_Sce_Assembly03.fasta.gz'.
RYE-SELECT Lo7 WGS contigs version 2 v2 Dec 2016 e!DAL-PGP 27888547 154,707 1.68 Gbp
Description: The WGS Scaffolds of inbred line Lo7. This data was published in the year 2016 by the RYE-Select consortium and is described in Bauer et al. (2016). It is comprised by a WGS reference 'Secale_cereale_Lo7_v2.dna.genome.fa.gz'.
RYE-SELECT Lo7 gene models version 3 v3 Mar 2016 27,784 25.85 Mbp
Description: The gene models of inbred line Lo7. This data was published in the year 2016 by the RYE-Select consortium and is described in Bauer et al. (2016).
Trinity assembly 0B Dec 2012 107,534 103.39 Mbp
Description: All RNASeq contigs from rye with 0Bs. Dataset for research of B-chromosomes.
Trinity assembly 4B Dec 2012 141,311 147.26 Mbp
Description: All RNASeq contigs from Rye with 4Bs. Dataset for research of B-chromosomes.
Anth 4B Trinity Jun 2014 81,209 97.54 Mbp
Description: Dataset for research of B-chromosomes
TrSc 4B Trinity Jun 2014 87,987 112.18 Mbp
Description: Dataset for research of B-chromosomes
Rye Bchromosome contigs Jan 2011 75,827 26.06 Mbp
Description: Assembly results computed at the HMGU for the dataset - All Reads from sorted Rye B chromosomes

Rye proteins

File Name Version Date Source Pubmed ID #Sequences #Bases
Secale cereale Lo7 - HC proteins v1 Feb 2019 33737754 34,441 14.73 Mbp
Secale cereale Lo7 - LC proteins v1 Feb 2019 33737754 22,781 4.83 Mbp
Secale cereale Lo7 - all proteins v1 Feb 2019 33737754 57,222 19.56 Mbp
RYE-SELECT Lo7 gene models version 3 v3 Mar 2016 27,784 8.62 Mbp

Wheat

File Name Version Date Source Pubmed ID #Sequences #Bases
Wheat cv. 'Chinese Spring' Pseudomolecules iwgsc_refseq_v1.0 Oct 2016 22 14.55 Gbp
Wheat cv. 'Chinese Spring' HC and LC transcripts iwgsc_refseq_v1.0 May 2017 269,583 276.62 Mbp
Triticum aestivum cv. Chinese Spring chromosomes 0_ref41__Chinese_Spring:chr 22 14.55 Gbp
Triticum aestivum cv. Chinese Spring chromosomes 1__Chinese_Spring:chr 0 0 bytes
Wild emmer 'Zavitan' v2 Dec 2015 ENA 28684525 15 10.51 Gbp
Description: Tetraploid wild emmer cv. 'Zavitan' pseudomolecules (Dec 2015)

Wheat pan-genome

File Name Version Date Source Pubmed ID #Sequences #Bases
Arina Lrfor Pseudomolecules v3.0 Aug 2018 ENA 33239791 135,719 14.65 Gbp
Description: Triticum aestivum cv. 'Arina Lrfor' pseudomolecules and unlocalised scaffolds
Wheat cv. 'Arina Lrfor' gene projection CDS v3.0 33239791 120,967 139.5 Mbp
Wheat cv. 'Cadenza' scaffolds v1.1 1,065,576 14.08 Gbp
Wheat cv. 'Clair' scaffolds v1.1 1,216,421 14.3 Gbp
Wheat cv. 'Jagger' Pseudomolecules v1.1 May 2018 ENA 33239791 138,393 14.54 Gbp
Wheat cv. 'Jagger' gene projection CDS v1.1 33239791 119,461 138.31 Mbp
Wheat cv. 'Julius' Pseudomolecules v1.0, MAGIC3 Aug 2017 ENA 33239791 98,541 14.39 Gbp
Wheat cv. 'Julius' gene projection CDS v1.0, MAGIC3 33239791 119,135 138.05 Mbp
Wheat cv. 'Lancer' Pseudomolecules v1.0 Nov 2018 ENA 33239791 119,569 14.28 Gbp
Wheat cv. 'Longreach Lancer' gene projection CDS v1.0 33239791 120,045 138.8 Mbp
Wheat cv. 'CDC Landmark' Pseudomolecules v1.0 Aug 2017 ENA 33239791 106,140 14.43 Gbp
Wheat cv. 'CDC Landmark' gene projection CDS v1.0 33239791 119,027 138.24 Mbp
Wheat cv. 'Mace' Pseudomolecules v1.0 Nov 2018 ENA 33239791 119,606 14.35 Gbp
Wheat cv. 'Mace' gene projection CDS v1.0 Jul 2019 33239791 119,772 138.75 Mbp
Wheat cv. 'Norin61' Pseudomolecules v1.1 Mar 2019 ENA 33239791 21,465 14.91 Gbp
Wheat cv. 'Norin61' gene projection CDS v1.1 33239791 118,734 138.08 Mbp
Wheat cv. 'Paragon' scaffolds v1.1 1,254,002 14.44 Gbp
Wheat cv. 'Robigus' scaffolds v1.1 1,079 455.67 Mbp
Wheat cv. 'SY Mattis' Pseudomolecules v1 Oct 2018 ENA 33239791 705,997 14.88 Gbp
Wheat cv. 'Chinese spring' gene projection CDS v1 33239791 123,075 142.1 Mbp
Triticum spelta accession PI:190962 Pseudomolecules v1.0 May 2019 ENA 33239791 145,069 14.44 Gbp
Triticum spelta accession PI:190962 gene projection CDS v1.0 33239791 120,104 138.71 Mbp
Wheat cv. 'CDC Stanley' Pseudomolecules v1.2 Sep 2018 ENA 33239791 104,381 14.46 Gbp
Wheat cv. 'CDC Stanley' gene projection CDS v1.2 33239791 119,377 138.5 Mbp
Wheat cv. 'Weebill 1' Scaffolds v1 1,411,939 14.2 Gbp

Wheat pan-genome proteins

File Name Version Date Source Pubmed ID #Sequences #Bases
Wheat cv. 'Arina Lrfor' gene projection proteins v3.0 33239791 120,967 46.5 Mbp
Wheat cv. 'Jagger' gene projection proteins v1.1 33239791 119,461 46.1 Mbp
Wheat cv. 'Julius' gene projection proteins v1.0 33239791 119,135 46.01 Mbp
Wheat cv. 'Longreach Lancer' gene projection proteins v1.0 33239791 120,045 46.26 Mbp
Wheat cv. 'CDC Landmark' gene projection proteins v1.0 33239791 119,027 46.08 Mbp
Wheat cv. 'Mace' gene projection proteins v1.0 33239791 119,772 46.25 Mbp
Wheat cv. 'Norin61' gene projection proteins v1.1 33239791 118,734 46.02 Mbp
Wheat cv. 'Chinese spring' gene projection proteins v1.0 33239791 123,075 47.37 Mbp
Triticum spelta accession PI:190962 gene projection proteins v1.0 33239791 120,104 46.23 Mbp
Wheat cv. 'CDC Stanley' gene projection proteins v1.2 33239791 119,377 46.16 Mbp